Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECSE_RS05315 Genome accession   NC_011415
Coordinates   1105252..1105881 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli SE11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100252..1110881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSE_RS05290 (ECSE_1016) ycbZ 1100653..1102413 (-) 1761 WP_000156526.1 AAA family ATPase -
  ECSE_RS05295 (ECSE_1017) matP 1102599..1103051 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECSE_RS05300 (ECSE_1018) ompA 1103127..1104167 (-) 1041 WP_000750416.1 porin OmpA -
  ECSE_RS05310 (ECSE_1020) sulA 1104524..1105033 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECSE_RS05315 (ECSE_1021) sxy/tfoX 1105252..1105881 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECSE_RS05320 (ECSE_1022) yccS 1105844..1108006 (-) 2163 WP_000875020.1 YccS family putative transporter -
  ECSE_RS05325 (ECSE_1023) yccF 1108016..1108462 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECSE_RS05330 (ECSE_1024) helD 1108585..1110639 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=31736 ECSE_RS05315 WP_000839153.1 1105252..1105881(+) (sxy/tfoX) [Escherichia coli SE11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=31736 ECSE_RS05315 WP_000839153.1 1105252..1105881(+) (sxy/tfoX) [Escherichia coli SE11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment