Detailed information NTG0317345

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: E7Z57_RS13010
• Genome accession: NZ_CP039339
• Coordinates: 2725735..2727168 (-)
• Length: 477 a.a.
• NCBI ID: WP_138929267.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain UW386
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2720735..2732168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E7Z57_RS13000 (E7Z57_13000)	-	2720908..2721591 (+)	684	WP_138929265.1	pyridoxamine 5'-phosphate oxidase family protein	-
E7Z57_RS13005 (E7Z57_13005)	-	2721976..2725539 (+)	3564	WP_138929266.1	indolepyruvate ferredoxin oxidoreductase family protein	-
E7Z57_RS13010 (E7Z57_13010)	sbcB	2725735..2727168 (-)	1434	WP_138929267.1	exodeoxyribonuclease I	Machinery gene
E7Z57_RS13015 (E7Z57_13015)	eutC	2727232..2728044 (-)	813	WP_138929268.1	ethanolamine ammonia-lyase subunit EutC	-
E7Z57_RS13020 (E7Z57_13020)	-	2728053..2729447 (-)	1395	WP_138929269.1	ethanolamine ammonia-lyase subunit EutB	-
E7Z57_RS13025 (E7Z57_13025)	-	2729531..2731051 (-)	1521	WP_064048263.1	aldehyde dehydrogenase family protein	-

Sequence

Protein

• Length: 477 a.a.
• Molecular weight: 54335.21 Da
• Isoelectric Point: 4.8757

>NTDB_id=317345 E7Z57_RS13010 WP_138929267.1 2725735..2727168(-) (sbcB) [Ralstonia pseudosolanacearum strain UW386]
MTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLITGITPQQCLKTGIPEHRFAQ
AIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPEGIEWPVNGEGKPSFKL
EHLSQANGLLHEAAHDAVSDVRATIALARLIRNAQPRLFDFCFALRKKERVLAEIGDAPRPLLHVSGMYGVDRGCMAVVW
PLGWHPTNKNELIAWDLSFDPSELFHMDVAAIRERLFTRSADLPEGTARLPIKSIHINKSPIVIGNLKTLQPAQAERWGV
DFAAIERHAGIAQGAPDMRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELL
LRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDTRAEGILSALYDYAELVTPE

Nucleotide

• Length: 1434 bp

>NTDB_id=317345 E7Z57_RS13010 WP_138929267.1 2725735..2727168(-) (sbcB) [Ralstonia pseudosolanacearum strain UW386]
GTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGCCGTGCCGCGCCGCGATCGTCCGGCCCAGTTCGCCGG
CATCCGTACCGACGCCGAGCTCAACGAGATTGGCGAGCCGGTCGAGCTGTTCTGCCGGCCGTCCAACGACTGGCTGCCCG
ACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGCCTCAAGACAGGCATCCCGGAGCACCGCTTCGCGCAG
GCCATCGAGCGCGAGCTGGCCACGCCAGGCACCATCGGCGTCGGCTACAACTCCATCCGCTTCGACGATGAGGTCACGCG
CCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAATGGCAAAACACGTGCGGCCGGTGGGATCTGCTCGACG
TGGTGCGCACCACCTGGGCGCTGCGCCCGGAGGGCATCGAGTGGCCGGTCAACGGCGAGGGCAAGCCGAGCTTCAAGCTT
GAACACTTGTCGCAGGCCAACGGTCTGCTGCACGAGGCCGCGCACGATGCGGTGTCCGACGTGCGCGCGACCATCGCGCT
GGCGCGGCTGATCCGCAATGCGCAGCCCCGCCTGTTCGATTTCTGCTTCGCGCTGCGGAAGAAGGAGCGTGTGCTGGCCG
AGATCGGCGATGCGCCGCGGCCGTTGCTGCATGTCTCCGGTATGTACGGCGTGGACCGTGGCTGCATGGCGGTTGTCTGG
CCGCTCGGCTGGCACCCGACCAACAAGAACGAACTGATCGCGTGGGATCTGTCGTTTGATCCGTCGGAGCTGTTCCACAT
GGACGTGGCTGCCATCCGCGAGCGCCTGTTCACGCGCAGCGCGGACCTGCCCGAAGGCACCGCGCGCCTGCCCATCAAGT
CGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAGACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCGTC
GACTTTGCGGCCATCGAGCGTCACGCCGGTATCGCCCAAGGCGCACCCGACATGCGCGAAACGTGGCGCCAGGTCTACGC
CCGCGAACTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACGGCGGCTTCGTCGGCAACGACGACCGCCGCACGCTCA
ACGAACTGCGCACGCTCTCGGGCGAGCAGCTCGCGCAGCTGCACCCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTG
TTGCGCTACCGCGCGCGCAACTTCCCCGACACGCTCACGGAAGACGAGCACGAGCAGTGGGAACAGCTGCGTGCCGAGCG
TCTGTTCGAGGGGCGCGATGGCTACCTGACGCTGGATGCCTATGCCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGG
ACAAGGGCGATACACGTGCCGAAGGCATTCTCTCGGCGTTGTACGACTACGCTGAGTTGGTGACGCCGGAATAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (7-187)

• Exonuclease C-terminal (ExoI_SH3) (206-472)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	45.992	99.371	0.457