Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D7I46_RS12260 Genome accession   NZ_CP032627
Coordinates   2563908..2565068 (+) Length   386 a.a.
NCBI ID   WP_120773128.1    Uniprot ID   A0A387BKM7
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2558908..2570068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS12245 (D7I46_12245) era 2559803..2560714 (+) 912 WP_120773381.1 GTPase Era -
  D7I46_RS12250 (D7I46_12250) asnB 2560865..2562457 (+) 1593 WP_120773126.1 asparagine synthase B -
  D7I46_RS12255 (D7I46_12255) mutM 2562678..2563499 (+) 822 WP_120773127.1 DNA-formamidopyrimidine glycosylase -
  D7I46_RS12260 (D7I46_12260) recA 2563908..2565068 (+) 1161 WP_120773128.1 recombinase RecA Machinery gene
  D7I46_RS12265 (D7I46_12265) - 2565096..2566469 (-) 1374 WP_120773129.1 amino acid permease -
  D7I46_RS12270 (D7I46_12270) - 2566491..2567879 (-) 1389 WP_120773130.1 amino acid permease -
  D7I46_RS12275 (D7I46_12275) - 2568410..2568793 (+) 384 WP_120773131.1 YlbF family regulator -
  D7I46_RS12280 (D7I46_12280) - 2568780..2569091 (+) 312 WP_120773132.1 YlbG family protein -
  D7I46_RS12285 (D7I46_12285) - 2569511..2570029 (+) 519 WP_120773133.1 DsbA family protein -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 41198.18 Da        Isoelectric Point: 5.4101

>NTDB_id=317330 D7I46_RS12260 WP_120773128.1 2563908..2565068(+) (recA) [Lactococcus allomyrinae strain 1JSPR-7]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAAVQKEGGIAAYIDAENALDPEYAKALGVNIDELLLSQPDFGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGTGDNKTALGKITKIKVVKNKVAPPFKTALVDIMFGEGISKTGELLTIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKGYLKEHQEVFDEIDHKIRVAHGLLGETAETIVDEAAAKAKKTTKAKKEEIQEPEEIELELED

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=317330 D7I46_RS12260 WP_120773128.1 2563908..2565068(+) (recA) [Lactococcus allomyrinae strain 1JSPR-7]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAGAAATACGGAGCAGAGCGAGATAAAGCATTAGCTGATGC
ACTTGCATTGATTGAGAAAGATTTTGGGAAAGGCTCACTCATGCGTCTCGGAGAAGCAGCTAATCAAAAAGTATCAGTCG
TAAGCTCAGGTTCACTTGCACTTGACATTGCACTTGGTGCTGGTGGATATCCTAAAGGACGTATCATCGAAATCTATGGT
CCAGAATCATCTGGTAAAACGACCGTCGCGCTCCATGCTGTTGCAGCTGTTCAAAAAGAGGGCGGTATTGCGGCCTATAT
CGATGCAGAAAATGCACTTGATCCAGAATATGCAAAAGCACTTGGAGTTAATATTGATGAACTCTTGCTCTCACAACCAG
ACTTTGGTGAACAAGGTCTTCAAATTGCTGAAAAACTGATTACATCAGGAGCAGTTGATCTTGTTGTTATCGACTCAGTT
GCAGCACTCGTTCCCAAAGCTGAAATTGATGGAGAAATTGGTGATAGTTCAGTTGGTTTACAAGCTCGTATGATGTCTCA
AGCGATGCGTAAACTTGCAGGACACATCAACAAAACAAAAACAACGGCAATTTTTATCAACCAATTGCGTGAAAAAGTAG
GTGTGATGTTTGGTTCACCTGAGACAACGCCTGGTGGACGCGCGCTCAAGTTCTATGCATCAGTTCGTCTTGACGTTCGT
GGCTCGACAAAAATTGAGGAAGGAACGGGAGATAACAAAACGGCGCTTGGTAAAATCACAAAGATTAAAGTTGTCAAAAA
TAAAGTTGCTCCACCATTTAAAACGGCACTTGTCGACATTATGTTTGGTGAAGGAATTTCAAAGACAGGGGAGTTGCTGA
CTATTGCAGTAGATGAAGGAATCATCAAAAAATCGGGAGCATGGTTCGCCTATAATGATGAAAAAATCGGTCAAGGAGCT
GAAAAAGCTAAGGGATATCTCAAAGAACATCAGGAAGTCTTTGATGAGATTGACCACAAAATTCGCGTTGCGCATGGACT
TCTCGGAGAGACTGCAGAAACTATAGTGGATGAAGCAGCAGCCAAAGCAAAAAAGACAACAAAAGCTAAAAAAGAAGAAA
TTCAAGAACCAGAAGAAATCGAACTTGAGCTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BKM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

95.157

90.933

0.865
  recA Streptococcus mitis SK321

74.359

100

0.751
  recA Streptococcus pneumoniae D39

73.913

100

0.749
  recA Streptococcus pneumoniae R6

73.913

100

0.749
  recA Streptococcus pneumoniae TIGR4

73.913

100

0.749
  recA Streptococcus pneumoniae Rx1

73.913

100

0.749
  recA Streptococcus mitis NCTC 12261

79.167

93.264

0.738
  recA Streptococcus mutans UA159

71.54

99.223

0.71
  recA Streptococcus pyogenes NZ131

78.674

89.896

0.707
  recA Latilactobacillus sakei subsp. sakei 23K

68.997

85.233

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

66.061

85.492

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.486

85.233

0.516
  recA Acinetobacter baylyi ADP1

54.696

93.782

0.513
  recA Glaesserella parasuis strain SC1401

57.267

89.119

0.51
  recA Vibrio cholerae strain A1552

60.681

83.679

0.508
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.681

83.679

0.508
  recA Neisseria gonorrhoeae strain FA1090

59.271

85.233

0.505
  recA Neisseria gonorrhoeae MS11

59.271

85.233

0.505
  recA Neisseria gonorrhoeae MS11

59.271

85.233

0.505
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

84.456

0.5
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

85.233

0.497
  recA Helicobacter pylori 26695

58.359

85.233

0.497
  recA Helicobacter pylori strain NCTC11637

58.359

85.233

0.497
  recA Acinetobacter baumannii D1279779

59.133

83.679

0.495
  recA Ralstonia pseudosolanacearum GMI1000

57.927

84.974

0.492
  recA Pseudomonas stutzeri DSM 10701

57.895

83.679

0.484

Multiple sequence alignment