Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   E7Z57_RS03125 Genome accession   NZ_CP039339
Coordinates   608101..610644 (+) Length   847 a.a.
NCBI ID   WP_138928457.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UW386     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603101..615644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z57_RS03105 (E7Z57_03105) - 604118..605197 (-) 1080 WP_138928455.1 hypothetical protein -
  E7Z57_RS03110 (E7Z57_03110) - 605270..606520 (+) 1251 WP_064049648.1 lipoprotein-releasing ABC transporter permease subunit -
  E7Z57_RS03115 (E7Z57_03115) lolD 606513..607247 (+) 735 WP_138928456.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  E7Z57_RS03120 (E7Z57_03120) - 607276..608091 (+) 816 WP_064049652.1 TatD family hydrolase -
  E7Z57_RS03125 (E7Z57_03125) comA 608101..610644 (+) 2544 WP_138928457.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E7Z57_RS03130 (E7Z57_03130) - 610750..612231 (+) 1482 WP_064049654.1 circularly permuted type 2 ATP-grasp protein -
  E7Z57_RS03135 (E7Z57_03135) - 612294..613244 (+) 951 WP_011001072.1 alpha-E domain-containing protein -
  E7Z57_RS03140 (E7Z57_03140) - 613302..614138 (+) 837 WP_064049656.1 transglutaminase family protein -
  E7Z57_RS03145 (E7Z57_03145) - 614221..615135 (+) 915 WP_138928458.1 peptidase -

Sequence

Protein


Download         Length: 847 a.a.        Molecular weight: 91259.14 Da        Isoelectric Point: 10.6816

>NTDB_id=317311 E7Z57_RS03125 WP_138928457.1 608101..610644(+) (comA) [Ralstonia pseudosolanacearum strain UW386]
MRALLIGFVAGCMALQMRPALVPVWQPALLGLACLLAMAWLRRGGRLPRLVPVMAVLAAACAGFGWSDWRAQQRLSVVLA
PEWEGKDIRATGIVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW
RLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNVLMGEADAGADVGLRVERWRAAVRRHLLAALPEARYA
PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA
AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAAWVALVDPWAVMSAGGWLSFGAVAVIFLAARI
AAAEARDDGRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLPLFRQVSVVSAVANALAIPVVSFVTTPLALMGAALPAPW
SQPVLAWAEASFAWLMPWLDVLALPDWSMWVAPAAPAWAWGLAVAGVPLLLVPGGHRAWAWRAQGTVLLLPMLLARAPAP
PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVISHEDSDHAGGTETVMAG
VPVRTMLASLPPGHRLERQARALGIEPAGCVAGQRWAWDGVAFEILHPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG
DIGRAQEAALIAAETPERLMADILLVPHHGSRTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD
ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPAGAQP

Nucleotide


Download         Length: 2544 bp        

>NTDB_id=317311 E7Z57_RS03125 WP_138928457.1 608101..610644(+) (comA) [Ralstonia pseudosolanacearum strain UW386]
ATGCGCGCCCTGCTGATCGGCTTCGTCGCGGGGTGCATGGCGCTGCAGATGCGGCCGGCGCTGGTGCCGGTGTGGCAGCC
GGCGCTGCTTGGGCTCGCTTGCCTGCTGGCGATGGCGTGGCTGCGGCGCGGCGGGCGGTTGCCCAGGCTCGTTCCCGTGA
TGGCCGTGCTGGCGGCGGCCTGCGCCGGCTTCGGCTGGAGCGACTGGCGCGCGCAGCAGCGCTTGTCCGTGGTGCTGGCG
CCCGAGTGGGAGGGCAAGGACATCCGCGCGACGGGCATCGTGGCCGAGCTGCCCGAGGTTACCGAAGACGCCACGCGTTT
CCTGTTCCGGATTGAATCCAGCGACGCGGGCGATGCCGTACCGCCGCGCGTGCGGCTGTCGTGGTACGGCCTGCGCAGCT
GGCACGAGCGGCAGCGGGAGGCGGAGGCCGCCACTGATCGCCGCGCCGGCATTCCCGATCTGCAGCCCGGCCAGCGCTGG
CGGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGATGGCGAATACGCGATGCTTGCCGA
CGATGTTCGCGCCGCGGGCTACGTCTACACGGGCAAACGCGCGCGCAACGTGCTGATGGGCGAAGCCGATGCCGGTGCCG
ATGTCGGTCTCCGTGTCGAGCGCTGGCGCGCCGCGGTGCGGCGGCACCTCCTGGCCGCGCTGCCCGAGGCACGCTACGCG
CCGGTGATCGTCGCCCTGGTGGTGGGCGACCAGAGCGGCATCGCGCAGGCGGATTGGGAGCGCTTCCGCCGCACCGGCAT
CAGCCATCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTTGGCGCGCTGTGGATGGCGCTGTGGC
GGCGTTCGTTCGGCCTGGCCCGCTGGCTGCGCACACCGCTGCCGCTGCGCATGCCGGCCCAGCGCGCCGGCGCCGTCGCC
GCCATGGCCGCGGCGTTTGCCTATTGCCTGCTGGCGGGAATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGAC
CGTTGCCGTGGCGCGGCTGGCCGATCGCAGCGTGCCGGTCAGTCTGTCGCTGTGCTGGGCGGCGGCCTGGGTGGCGCTGG
TGGATCCGTGGGCGGTCATGTCGGCGGGCGGCTGGCTGTCGTTCGGCGCCGTGGCGGTCATCTTCCTGGCCGCACGGATC
GCTGCCGCCGAGGCGCGGGACGACGGCCGCCGGCCCGCCTGGCCGGTGCGCGCCTGGCGCGGCCTGCGCGGCGCCGCGCG
CGTCCAGCTGGCCGTGACGTTCGGCCTGCTGCCGTTGACCTTGCCGCTGTTCCGGCAAGTCTCGGTGGTGTCGGCCGTGG
CCAACGCGCTGGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGCTGATGGGCGCGGCGTTGCCCGCGCCATGG
TCGCAGCCCGTGCTGGCATGGGCCGAGGCCAGCTTCGCATGGCTCATGCCGTGGCTGGATGTGCTGGCGTTGCCCGACTG
GTCGATGTGGGTGGCGCCCGCCGCGCCGGCCTGGGCGTGGGGGCTGGCTGTGGCCGGTGTGCCGTTGCTGCTCGTGCCGG
GCGGGCATCGCGCCTGGGCTTGGCGGGCGCAGGGCACGGTGCTGCTGCTGCCGATGCTGCTGGCACGCGCCCCGGCGCCG
CCGCCGGGCGAGTTCCGCATGGTCGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCACCGGCT
GCTGTTCGATACCGGCCCGCGCCAAGGCGACCTGGCCGATGCCGCCGATCGCGTGATCGTCCCGTATCTGCGCGGACATG
GGGTGCAGGCCATCGACACGCTGGTGATCAGCCATGAGGACAGCGATCACGCCGGCGGCACCGAAACGGTGATGGCCGGG
GTGCCGGTGCGCACCATGCTGGCGTCCCTGCCGCCCGGCCACCGGCTGGAGCGGCAGGCCCGCGCGCTCGGCATCGAGCC
CGCTGGCTGCGTGGCCGGGCAGCGCTGGGCATGGGATGGCGTCGCCTTCGAAATCCTGCATCCGGTGCAAGTGCCCTCCG
ATCGGGCAGCCGTGTCCAGCAATGCCCGCAGCTGCGTGCTGCGCATCGCCAACGCGCGCTACGCCGCCATGCTGGCCGGC
GACATCGGCCGCGCCCAGGAAGCGGCGCTGATCGCCGCCGAAACACCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCC
CCATCACGGCAGCAGGACGAGCTCCAGCGGCGCGTTCCTGGACGCGGTCTCTCCGCAGGTGGCGGTGTTCCAGGTCGGCT
ACCGCAACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGGCATCGAGCGGTTGCGCACCGAT
GCCACCGGGGCCGTGGTCATCGAGACGCGCGGCGATGCGCTGGCGGTGCGGACGGCGCGGTCGATGCGGCCGCGCTACTG
GTCCTCGGCACTGGAGGTGGCCGCCCTGGCAGAGACCACGGAGCCCGCGGGCGCGCAGCCGTAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(585-744)

Competence protein (Competence)

(246-532)

Domain of unknown function (DUF4131) (DUF4131)

(23-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

96.222

100

0.962