Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   E7Z57_RS00285 Genome accession   NZ_CP039339
Coordinates   51728..52096 (+) Length   122 a.a.
NCBI ID   WP_003261832.1    Uniprot ID   A0ABF7RF33
Organism   Ralstonia pseudosolanacearum strain UW386     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46728..57096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z57_RS00255 (E7Z57_00255) - 47233..47859 (-) 627 WP_064050119.1 LemA family protein -
  E7Z57_RS00265 (E7Z57_00265) dapA 48243..49157 (+) 915 WP_138928164.1 4-hydroxy-tetrahydrodipicolinate synthase -
  E7Z57_RS00270 (E7Z57_00270) hemL 49233..50525 (-) 1293 WP_175426018.1 glutamate-1-semialdehyde 2,1-aminomutase -
  E7Z57_RS00275 (E7Z57_00275) - 50746..50928 (+) 183 WP_003261842.1 rubredoxin -
  E7Z57_RS00280 (E7Z57_00280) pilG 51229..51696 (+) 468 WP_016723446.1 response regulator Regulator
  E7Z57_RS00285 (E7Z57_00285) pilH 51728..52096 (+) 369 WP_003261832.1 response regulator Machinery gene
  E7Z57_RS00290 (E7Z57_00290) - 52155..52700 (+) 546 WP_064050116.1 chemotaxis protein CheW -
  E7Z57_RS00295 (E7Z57_00295) - 52947..55178 (+) 2232 WP_064050115.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13468.71 Da        Isoelectric Point: 4.9222

>NTDB_id=317306 E7Z57_RS00285 WP_003261832.1 51728..52096(+) (pilH) [Ralstonia pseudosolanacearum strain UW386]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEDLLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=317306 E7Z57_RS00285 WP_003261832.1 51728..52096(+) (pilH) [Ralstonia pseudosolanacearum strain UW386]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAGGGCGAGCCCTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGTGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGATCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABF7RF33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.068

96.721

0.426