Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D7I45_RS05220 Genome accession   NZ_CP032626
Coordinates   1043128..1044504 (-) Length   458 a.a.
NCBI ID   WP_120784673.1    Uniprot ID   A0A387AU99
Organism   Apilactobacillus bombintestini strain BHWM-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038128..1049504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I45_RS06210 - 1038466..1038885 (-) 420 WP_162924103.1 Mini-ribonuclease 3 -
  D7I45_RS05205 (D7I45_05205) cysS 1038889..1040295 (-) 1407 WP_162924104.1 cysteine--tRNA ligase -
  D7I45_RS05210 (D7I45_05210) gltX 1040421..1041911 (-) 1491 WP_120784671.1 glutamate--tRNA ligase -
  D7I45_RS05215 (D7I45_05215) - 1042027..1043103 (-) 1077 WP_120784672.1 PIN domain-containing protein -
  D7I45_RS05220 (D7I45_05220) radA 1043128..1044504 (-) 1377 WP_120784673.1 DNA repair protein RadA Machinery gene
  D7I45_RS05225 (D7I45_05225) - 1044528..1045064 (-) 537 WP_120784674.1 dUTP diphosphatase -
  D7I45_RS05230 (D7I45_05230) rpiA 1045298..1045990 (+) 693 WP_120784675.1 ribose-5-phosphate isomerase RpiA -
  D7I45_RS05235 (D7I45_05235) - 1046114..1047454 (+) 1341 WP_120784676.1 C1 family peptidase -
  D7I45_RS05240 (D7I45_05240) - 1047503..1048171 (-) 669 WP_120784677.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  D7I45_RS05245 (D7I45_05245) - 1048185..1049138 (-) 954 WP_120784678.1 DMT family transporter -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49712.11 Da        Isoelectric Point: 7.3485

>NTDB_id=317287 D7I45_RS05220 WP_120784673.1 1043128..1044504(-) (radA) [Apilactobacillus bombintestini strain BHWM-4]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEKTVQKEATGLKATRRMDFNGQQTKPQLIKDVKFEKETRFATDSEE
FNRVLGGGVVPGSLILIGGDPGIGKSTLLLQISGQLSQKKQKVLYVSGEESASQIKIRADRLDVDGSNMYLYPETDMDAI
KSAIDDLKPDTVVIDSVQTISEAQVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGAIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFEMQESGLKEVANPSEVFLEERLRNATGSAIVVAMEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKDKGTDPAECYIGEIGL
TGEIRRVNRIEQRVQEAQKLGFKRVLVPKHNLSGWTAPNGIEVVGVSTLAQAIKLALK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=317287 D7I45_RS05220 WP_120784673.1 1043128..1044504(-) (radA) [Apilactobacillus bombintestini strain BHWM-4]
GTGGCTAAGGTAAAAACTCAATTTGTTTGTGAAGAATGTGGATATATTTCTCCTAAGTATTTAGGTCACTGTCCTAACTG
TGGAAAGTGGAATACTTTTGAAGAAAAAACCGTACAAAAAGAAGCAACGGGTTTGAAAGCAACTCGTAGAATGGACTTTA
ATGGTCAACAAACTAAACCTCAACTAATAAAAGACGTTAAATTCGAAAAAGAAACTCGTTTTGCTACTGATTCTGAAGAA
TTTAATCGTGTATTAGGTGGTGGAGTGGTTCCTGGTTCACTAATTTTAATTGGTGGTGATCCAGGAATTGGTAAATCTAC
CTTGCTATTACAAATTTCTGGTCAATTAAGTCAGAAAAAACAAAAAGTCTTATATGTATCTGGAGAAGAAAGTGCCAGTC
AAATTAAGATAAGAGCTGACCGTTTAGATGTTGACGGTAGCAATATGTATTTATATCCAGAAACTGATATGGATGCTATA
AAGAGTGCTATCGATGATTTGAAACCTGATACGGTAGTAATTGATTCTGTGCAAACCATTTCAGAAGCTCAAGTAGACTC
AGCAATTGGTTCAGTATCTCAAGTTAGAGCAATTACTGCTGATTTAATGTCTATTGCTAAAACAAATGGAATTACTATTT
TCGTGGTAGGCCATGTTACTAAAGGTGGTGCTATTGCAGGACCTAAGACACTTGAACACATGGTAGATACTGTATTGTAC
TTTGAAGGTGACATGCATCATTCTTACCGTATTTTACGTGCCGTTAAAAATCGTTTTGGTTCCACTGATGAACTAGGGAT
TTTTGAAATGCAAGAATCTGGACTAAAGGAAGTTGCTAATCCTTCCGAAGTGTTCCTAGAGGAACGTTTACGTAATGCAA
CTGGTTCGGCCATTGTTGTTGCTATGGAAGGTACGCGTCCAATCTTAGTTGAAATTCAAGCATTAGTAACACCATCAGTA
TTTGGTAACGCTCAACGAACTGCTACTGGAATTGATAGAAATCGAGTTGCCGTTTTAATGGCGGTACTAGAAAAACGTGC
CGGCCTTATGTTGCAAAATCAGGATGCTTTCTTAAAAGCAGCAGGTGGAGTTAAATTAAATGAACCTGCAATTGATTTAG
CTGTTGCAATTAGTGTAGCTTCCAGTTATAAAGATAAGGGAACTGATCCTGCAGAATGCTATATTGGTGAAATTGGCTTA
ACGGGGGAAATTAGAAGAGTTAACCGCATAGAACAACGAGTTCAAGAAGCTCAAAAATTAGGCTTTAAACGAGTATTAGT
TCCAAAACATAACTTGTCGGGATGGACTGCTCCTAATGGAATTGAAGTAGTAGGAGTTTCCACCTTAGCGCAAGCTATAA
AATTAGCGCTTAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387AU99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

64.615

99.345

0.642
  radA Streptococcus pneumoniae Rx1

64.615

99.345

0.642
  radA Streptococcus pneumoniae D39

64.615

99.345

0.642
  radA Streptococcus mitis NCTC 12261

64.615

99.345

0.642
  radA Streptococcus pneumoniae TIGR4

64.615

99.345

0.642
  radA Streptococcus mitis SK321

64.615

99.345

0.642
  radA Bacillus subtilis subsp. subtilis str. 168

62.826

100

0.631

Multiple sequence alignment