Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E7Z58_RS08530 Genome accession   NZ_CP039298
Coordinates   1713207..1713812 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain PigCaeca_1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708207..1718812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z58_RS08505 (E7Z58_08495) aes 1708244..1709203 (+) 960 WP_000801850.1 acetyl esterase -
  E7Z58_RS08510 (E7Z58_08500) hemH 1709200..1710162 (-) 963 WP_001250088.1 ferrochelatase -
  E7Z58_RS08520 (E7Z58_08510) adk 1710398..1711042 (-) 645 WP_001220233.1 adenylate kinase -
  E7Z58_RS08525 (E7Z58_08515) htpG 1711223..1713097 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  E7Z58_RS08530 (E7Z58_08520) recR 1713207..1713812 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E7Z58_RS08535 (E7Z58_08525) ybaB 1713812..1714141 (-) 330 WP_094304079.1 YbaB/EbfC family nucleoid-associated protein -
  E7Z58_RS08540 (E7Z58_08530) dnaX 1714194..1716218 (-) 2025 WP_136360437.1 DNA polymerase III subunit gamma/tau -
  E7Z58_RS08545 (E7Z58_08535) apt 1716347..1716898 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E7Z58_RS08550 (E7Z58_08540) ybaN 1717051..1717428 (-) 378 WP_001188905.1 DUF454 family protein -
  E7Z58_RS08555 (E7Z58_08545) priC 1717498..1718025 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  E7Z58_RS08560 (E7Z58_08550) rsmS 1718039..1718200 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=317244 E7Z58_RS08530 WP_001195025.1 1713207..1713812(-) (recR) [Escherichia coli strain PigCaeca_1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=317244 E7Z58_RS08530 WP_001195025.1 1713207..1713812(-) (recR) [Escherichia coli strain PigCaeca_1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment