Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D7D53_RS03380 Genome accession   NZ_CP032621
Coordinates   673649..675451 (+) Length   600 a.a.
NCBI ID   WP_120770125.1    Uniprot ID   A0A387AWY9
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 668649..680451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS03355 (D7D53_03355) smpB 670544..671011 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  D7D53_RS03360 (D7D53_03360) tehB 671026..671886 (+) 861 WP_120770121.1 SAM-dependent methyltransferase TehB -
  D7D53_RS03365 (D7D53_03365) - 672005..672193 (+) 189 WP_120770122.1 type II toxin-antitoxin system HicA family toxin -
  D7D53_RS03370 (D7D53_03370) - 672221..672598 (+) 378 WP_120770123.1 type II toxin-antitoxin system HicB family antitoxin -
  D7D53_RS03375 (D7D53_03375) coiA 672677..673630 (+) 954 WP_120770124.1 competence protein CoiA Machinery gene
  D7D53_RS03380 (D7D53_03380) pepF 673649..675451 (+) 1803 WP_120770125.1 oligoendopeptidase F Regulator
  D7D53_RS03385 (D7D53_03385) - 675453..676166 (+) 714 WP_120770851.1 O-methyltransferase -
  D7D53_RS03390 (D7D53_03390) prsA 676233..677171 (+) 939 WP_120770126.1 peptidylprolyl isomerase PrsA -
  D7D53_RS09990 - 677214..677366 (-) 153 Protein_648 transposase -
  D7D53_RS03395 (D7D53_03395) - 677332..678147 (+) 816 Protein_649 dTDP-glucose 4,6-dehydratase -
  D7D53_RS03400 (D7D53_03400) - 678169..679755 (+) 1587 WP_120770127.1 glycosyltransferase family 52 -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69894.80 Da        Isoelectric Point: 4.5469

>NTDB_id=317185 D7D53_RS03380 WP_120770125.1 673649..675451(+) (pepF) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MVLQRNEINEKDTWDLSTIYPTDQAWEEALKDLTEQLEKVAQYEGHLLDSADNLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEKQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=317185 D7D53_RS03380 WP_120770125.1 673649..675451(+) (pepF) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGGTATTACAAAGAAATGAAATAAATGAAAAAGATACATGGGACCTATCAACAATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAATTGGAGAAAGTAGCCCAGTATGAAGGCCATCTCTTGGATAGTGCGGATAACC
TACTAGAAATCACTGAATTTTCTCTTGAAATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAAAATGAC
CAGGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAAGCAATGACTCTCTACAGTCAGCTAGATCAAGCTTTTTC
ATTCTATGAGCCTGAATTTATGGAAATCAGTGAAAAGCAATATGCTGACTTTTTAGAGGCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGATAAGCTTTTACAAGGCAAGGATCACGTTCTTTCACAACGTGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCAGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTGTTCCCTTATGTCCTCGACGA
TGATGGTAAGGAAGTGCAGCTCTCTCATGGGACTTACACACGTCTGATGGAGTCTAAAAATCGTGAGGTGCGTCGTGGTG
CTTATCAAGCTCTTTATGCAACTTATGAGCAATTCCAACATACTTATGCTAAAACCTTGCAAACAAATGTTAAAGTTCAA
AACTATCGTGCAAAAGTTCGCAACTACAAGAGTGCTCGTCATGCAGCCCTTGCAGCAAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCCCTCTTGCATCGTTACCTTGAGCTACGTTCAAAGATTTTGGGGA
TTTCAGACCTCAAAATGTACGATGTCTACACACCGCTTTCGTCTGTCGAATACAGTTTTACTTACCAAGAAGCTTTGAAA
AAGGCAGAAGATGCTTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTCAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGAGCTTACTCTGGTGGTTCTTACGATACAAATGCCTTTATGCTTCTTAACT
GGCAGGACAATCTAGACAATCTCTTTACTCTTGTTCATGAAACAGGTCACAGCATGCATTCCAGCTATACTCGCGAAACG
CAGCCTTATGTTTACGGGGATTACTCTATCTTCTTGGCTGAGATTGCATCGACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTTCTAGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAGCACGCAATCCACCAAGCAGACCAAAACGGGGAGGTCTTGACAAGCGATTTC
TTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCTCGCATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGTTTTGCAGCAGCCTCAGCCCTGGCTG
AAAAGATTGTTCATGGTAGTCAAGAAGACCGTGACCGTTATATCGACTACCTCAAGGCAGGTAAGTCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTCGAACGTCGTTT
GAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387AWY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.617

99.333

0.672

Multiple sequence alignment