Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D7D50_RS03875 Genome accession   NZ_CP032620
Coordinates   740327..741664 (+) Length   445 a.a.
NCBI ID   WP_237394714.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 735327..746664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS03855 (D7D50_03855) - 737893..738582 (+) 690 WP_120701520.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  D7D50_RS03860 (D7D50_03860) - 738820..739266 (+) 447 WP_070437493.1 dUTP diphosphatase -
  D7D50_RS03865 (D7D50_03865) - 739276..739731 (+) 456 WP_120701521.1 isochorismatase family protein -
  D7D50_RS03870 (D7D50_03870) - 739750..740289 (+) 540 WP_120701522.1 histidine phosphatase family protein -
  D7D50_RS03875 (D7D50_03875) radA 740327..741664 (+) 1338 WP_237394714.1 DNA repair protein RadA Machinery gene
  D7D50_RS03880 (D7D50_03880) - 741747..742442 (+) 696 WP_023024583.1 TIGR00266 family protein -
  D7D50_RS03890 (D7D50_03890) - 742731..743228 (+) 498 WP_120701524.1 beta-class carbonic anhydrase -
  D7D50_RS03895 (D7D50_03895) pgfM1 743308..746244 (+) 2937 WP_120701525.1 glycosyltransferase PgfM1 -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48391.63 Da        Isoelectric Point: 5.5619

>NTDB_id=317138 D7D50_RS03875 WP_237394714.1 740327..741664(+) (radA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MCQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERLQPNFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDF
NRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTRIEQR
INEAAKLGFTKIYAPKNSLQGITIPDGIQVIAVSTVGEVLKKVFS

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=317138 D7D50_RS03875 WP_237394714.1 740327..741664(+) (radA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATTTGTCAAAATTGTGCCTACAATTCACCCAAATACCTAGGGCGCTGTCCTAACTGTGGTTCTTGGTCTTCTTTTGTCGA
GGAGGTTGAGGTCGCAGAGGTCAAGAATGCCCGGGTGTCCTTGACAGGTGAGAAAACAAAACCCATGAAACTGGCGGATG
TGACCTCTATCAATGTCCATCGTACTAAGACCGAGATGGAGGAATTCAACCGCGTCCTTGGAGGCGGTGTCGTCCCAGGA
AGTCTGGTCCTCATCGGTGGAGATCCTGGAATTGGTAAATCGACTCTCCTCTTACAAGTATCGACCCAACTATCTCAAGT
GGGAACGGTCCTCTACGTTAGTGGAGAGGAGTCAGCCCAGCAAATCAAACTTCGGGCAGAGCGCTTGGGGGATATTGACA
GTGAGTTTTATCTCTATGCGGAGACCAATATGCAAAGCGTGCGAGCAGAAGTGGAGCGCCTCCAGCCTAACTTCCTTATC
ATTGACTCTATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGATCGGTTTCTCAGGTGCGGGAAGTGACGGC
AGAGCTCATGCAGCTGGCTAAGACCAATAATATCGCCATCTTCATCGTTGGCCATGTGACCAAGGAAGGAACCTTGGCAG
GTCCTCGGATGTTGGAGCACATGGTGGATACAGTGCTCTACTTTGAAGGGGAGCGCCACCATACCTTCCGGATCCTGAGA
GCGGTCAAGAACCGGTTTGGATCCACCAATGAAATTGGGATTTTCGAGATGCAATCAGGTGGCCTAGTCGAAGTCCTCAA
TCCGAGTCAGGTCTTCCTAGAAGAACGCTTGGATGGGGCGACTGGTTCTGCTATTGTCGTCACCATGGAAGGAAGTAGAC
CAATCTTGGCGGAGGTTCAGGCCTTGGTGACCCCAACTGTTTTTGGAAATGCCAAGCGGACGACGACAGGTCTTGACTTT
AATCGGGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGCGGACTTCTTCTTCAAAATCAAGATGCCTATCTCAAGTC
AGCTGGTGGTGTCAAACTGGACGAACCGGCCATTGACCTAGCCGTAGCGGTAGCCATTGCGTCTAGCTACAAGGAGCTTC
CAACCAATCCTCAAGAGGCCTTTATCGGTGAGATTGGCTTGACTGGGGAGATTCGTCGAGTGACTCGGATTGAGCAACGG
ATCAACGAAGCGGCTAAACTTGGCTTCACTAAGATTTATGCGCCAAAAAATTCTCTCCAAGGCATCACAATCCCAGATGG
TATTCAAGTGATAGCGGTCTCCACTGTAGGAGAGGTTCTGAAAAAAGTCTTTTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-417)

AAA domain (AAA_25)

(57-210)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

93.933

100

0.939
  radA Streptococcus pneumoniae D39

93.933

100

0.939
  radA Streptococcus pneumoniae R6

93.933

100

0.939
  radA Streptococcus pneumoniae TIGR4

93.933

100

0.939
  radA Streptococcus mitis SK321

93.933

100

0.939
  radA Streptococcus mitis NCTC 12261

93.708

100

0.937
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625

Multiple sequence alignment