Detailed information NTG0317137

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DZ927_RS07625
• Genome accession: NZ_CP039293
• Coordinates: 1548465..1549469 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PABL048
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1543465..1554469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DZ927_RS07595 (DZ927_007595)	fghA	1543557..1544408 (+)	852	WP_019484567.1	S-formylglutathione hydrolase	-
DZ927_RS07600 (DZ927_007600)	ispF	1544479..1544952 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DZ927_RS07605 (DZ927_007605)	truD	1544949..1546016 (+)	1068	WP_019484568.1	tRNA pseudouridine(13) synthase TruD	-
DZ927_RS07610 (DZ927_007610)	surE	1546004..1546753 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
DZ927_RS07615 (DZ927_007615)	-	1546786..1547421 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DZ927_RS07620 (DZ927_007620)	-	1547467..1548360 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
DZ927_RS07625 (DZ927_007625)	rpoS	1548465..1549469 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
DZ927_RS07630 (DZ927_007630)	fdxA	1549896..1550219 (-)	324	WP_003092272.1	ferredoxin FdxA	-
DZ927_RS07635 (DZ927_007635)	mutS	1550286..1552853 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
DZ927_RS07645 (DZ927_007645)	-	1552979..1553986 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=317137 DZ927_RS07625 WP_003113871.1 1548465..1549469(+) (rpoS) [Pseudomonas aeruginosa strain PABL048]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=317137 DZ927_RS07625 WP_003113871.1 1548465..1549469(+) (rpoS) [Pseudomonas aeruginosa strain PABL048]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653