Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   D7D50_RS01505 Genome accession   NZ_CP032620
Coordinates   286076..288181 (-) Length   701 a.a.
NCBI ID   WP_120701295.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 281076..293181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS01480 (D7D50_01480) eeP 282024..283283 (-) 1260 WP_023022155.1 RIP metalloprotease RseP Regulator
  D7D50_RS01485 (D7D50_01485) - 283325..284128 (-) 804 WP_023027645.1 phosphatidate cytidylyltransferase -
  D7D50_RS01490 (D7D50_01490) - 284140..284889 (-) 750 WP_120701294.1 isoprenyl transferase -
  D7D50_RS01495 (D7D50_01495) yajC 285022..285351 (-) 330 WP_006595033.1 preprotein translocase subunit YajC -
  D7D50_RS01500 (D7D50_01500) - 285540..285785 (-) 246 WP_023022151.1 hypothetical protein -
  D7D50_RS01505 (D7D50_01505) clpC 286076..288181 (-) 2106 WP_120701295.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  D7D50_RS01510 (D7D50_01510) - 288541..289305 (-) 765 WP_006595036.1 amino acid ABC transporter ATP-binding protein -
  D7D50_RS01515 (D7D50_01515) - 289325..290011 (-) 687 WP_006595037.1 amino acid ABC transporter permease -
  D7D50_RS01520 (D7D50_01520) - 290015..290707 (-) 693 WP_006595038.1 amino acid ABC transporter permease -
  D7D50_RS01525 (D7D50_01525) - 290774..291652 (-) 879 WP_120701296.1 transporter substrate-binding domain-containing protein -
  D7D50_RS01530 (D7D50_01530) - 291680..292681 (-) 1002 WP_120701297.1 uroporphyrinogen decarboxylase family protein -
  D7D50_RS01535 (D7D50_01535) - 292780..292980 (-) 201 WP_048717618.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 77571.34 Da        Isoelectric Point: 4.7227

>NTDB_id=317115 D7D50_RS01505 WP_120701295.1 286076..288181(-) (clpC) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MNNNFNNMDDLFNQLMGNMGGFRSESRRYMINGREVTPEEFAIYRQTGQLPTEGSEQVQHHQGKGMKQDGILAKLGRNLT
EEAREGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGT
QYRGSFEENIQNLVNEVKEAGNIILFFDEIHQILGAGSTGDGQGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNA
ALARRFNEVKVNAPSAEDTFKILQGIRELYQQHHNVVLPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPV
TDVHAVEHEIEEEKAKQEVAAAKEDYEAALNAKIRIEELEKQIANHTEDHKVTATVNDVAESVERMTGIPVSQMGATDIE
RLKDMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEY
SDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIA
TSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNRFNAVIEFSHLSKEDLSKIVDLMLAEVNKTLAKKDIDLTVTDAAK
EYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDNLDAKHLLADMEDGELVIKENGTSEE

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=317115 D7D50_RS01505 WP_120701295.1 286076..288181(-) (clpC) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAATAACAACTTTAACAATATGGATGATCTTTTCAATCAACTAATGGGAAACATGGGAGGTTTTCGTTCTGAAAGCCG
TCGCTATATGATCAACGGTCGTGAAGTGACACCGGAAGAATTCGCTATTTACCGTCAAACTGGACAACTTCCAACTGAAG
GAAGCGAGCAAGTGCAACACCATCAAGGTAAAGGCATGAAACAAGATGGGATCCTTGCAAAACTTGGTCGTAACTTGACT
GAAGAAGCTCGTGAAGGAAAATTGGATCCGGTCATTGGACGTAACAAAGAAATTCAAGAAACAGCTGAAATCTTGTCTCG
TCGTACCAAGAACAATCCTGTCCTTGTCGGGGATGCAGGTGTTGGTAAGACGGCTGTTGTAGAAGGATTGGCTCAAGCTA
TCGTGAACGGTGATGTTCCAGCAGCTATCAAGAACAAAGAAATCATCTCCATTGATATTTCTGGTCTAGAAGCTGGTACA
CAATACCGTGGTAGCTTTGAAGAAAATATTCAAAACTTGGTCAACGAAGTTAAAGAAGCTGGAAACATTATCCTCTTCTT
TGACGAAATCCACCAAATCCTTGGTGCAGGTAGCACAGGGGATGGTCAAGGATCTAAAGGTCTTGCGGATATCTTGAAAC
CAGCTCTTTCACGTGGGGAATTGACCGTGATTGGGGCAACCACTCAAGATGAATACCGCAACACCATCTTGAAAAACGCA
GCTCTTGCACGTCGTTTCAACGAAGTCAAGGTTAATGCTCCATCTGCTGAAGATACCTTCAAGATCCTCCAAGGAATCCG
TGAATTGTATCAACAACACCACAATGTGGTCTTGCCTGATGAAGTCTTGAAAGCGGCAGTTGATTATTCTGTTCAATACA
TTCCACAACGTAGCTTGCCTGATAAGGCCATCGACTTGGTCGATGTGACAGCTGCTCACTTGGCAGCACAACACCCAGTG
ACAGATGTCCATGCTGTGGAACATGAAATTGAAGAAGAAAAAGCGAAACAAGAAGTTGCAGCTGCTAAAGAAGATTACGA
AGCAGCCCTTAATGCAAAAATTCGGATCGAAGAACTTGAAAAACAAATTGCAAACCATACAGAAGATCACAAGGTGACGG
CAACTGTCAATGACGTAGCAGAGTCTGTCGAACGGATGACTGGTATTCCAGTATCACAAATGGGTGCAACTGATATCGAA
CGCTTGAAAGATATGGGTCACCGTTTGCAAACCAAGGTTATTGGTCAAGACAAGGCTGTTGAAGCCGTTGCCAAAGCGAT
CCGTCGGAACCGTGCAGGCTTTGACGAAGGAAACCGCCCAATCGGTAGCTTCCTCTTCGTAGGTCCTACTGGTGTCGGTA
AGACTGAGTTGGCTAAACAATTGGCCCTTGATATGTTTGGTACTAAAGATGCCATCATCCGTTTGGACATGTCAGAATAC
AGCGATCGTACAGCCGTTTCTAAGTTGATCGGTACAACTGCCGGTTATGTCGGTTACGACGACAACAACAATACCTTGAC
AGAACGTGTTCGCCGTAATCCATACTCTATCGTCCTTCTTGACGAGATTGAAAAGGCGGATCCTCAAGTGATCACCCTGC
TCCTTCAAGTCTTGGATGATGGTCGTTTGACAGATGGTCAAGGAAACACCGTTAACTTCAAGAATACGGTCATTATCGCT
ACTTCAAACGCTGGCTTTGGTTATGAAGCTAACTTGACAGAAGATGCGGACAAACCAGAACTCATGGATCGTTTGAAACC
ATTCTTCCGTCCAGAATTCCTCAACCGCTTCAATGCTGTCATCGAATTCTCACACTTGAGCAAGGAAGACCTTTCTAAGA
TTGTTGACTTGATGTTAGCAGAAGTGAATAAAACGCTTGCTAAGAAAGACATTGATTTGACAGTTACCGATGCGGCTAAA
GAATATATGACTGAAGAAGGATACGATGAAGTCATGGGTGTTCGTCCACTCCGTCGTGTGGTTGAGCAACAAATCCGTGA
TAAGGTGACAGACTTCCACTTGGATAACCTTGACGCAAAACACTTGTTGGCTGATATGGAAGATGGAGAATTGGTTATTA
AAGAGAATGGAACCTCAGAAGAATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(114-246)

AAA lid domain (AAA_lid_9)

(255-348)

AAA domain (Cdc48 subfamily) (AAA_2)

(439-599)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(606-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

48.08

100

0.482
  clpE Streptococcus mutans UA159

47.585

100

0.478
  clpE Streptococcus pneumoniae Rx1

49.074

92.439

0.454
  clpE Streptococcus pneumoniae D39

49.074

92.439

0.454
  clpE Streptococcus pneumoniae R6

49.074

92.439

0.454
  clpE Streptococcus pneumoniae TIGR4

48.83

91.441

0.447
  clpC Bacillus subtilis subsp. subtilis str. 168

45.975

92.154

0.424
  clpC Streptococcus pneumoniae Rx1

42.308

92.725

0.392
  clpC Streptococcus pneumoniae D39

42.308

92.725

0.392
  clpC Streptococcus pneumoniae TIGR4

42.154

92.725

0.391
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.598

88.017

0.384
  clpC Streptococcus thermophilus LMD-9

42.95

88.017

0.378
  clpC Streptococcus thermophilus LMG 18311

42.536

88.873

0.378
  clpC Streptococcus mutans UA159

41.868

88.588

0.371

Multiple sequence alignment