Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D7J84_RS18230 Genome accession   NZ_CP032608
Coordinates   3501642..3503381 (+) Length   579 a.a.
NCBI ID   WP_000947761.1    Uniprot ID   A0A9W7UY90
Organism   Bacillus thuringiensis strain QZL38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3496642..3508381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7J84_RS18210 (D7J84_18260) ispA 3496857..3497747 (+) 891 WP_000150373.1 (2E,6E)-farnesyl diphosphate synthase -
  D7J84_RS18215 (D7J84_18265) dxs 3498050..3499942 (+) 1893 WP_061884562.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D7J84_RS18220 (D7J84_18270) - 3499946..3500785 (+) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  D7J84_RS18225 (D7J84_18275) argR 3500928..3501377 (+) 450 WP_001032581.1 arginine repressor ArgR -
  D7J84_RS18230 (D7J84_18280) recN 3501642..3503381 (+) 1740 WP_000947761.1 DNA repair protein RecN Machinery gene
  D7J84_RS18235 (D7J84_18285) spoIVB 3503500..3504798 (+) 1299 WP_002164177.1 SpoIVB peptidase -
  D7J84_RS18245 (D7J84_18295) spo0A 3505089..3505883 (+) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  D7J84_RS18250 (D7J84_18300) - 3506136..3506691 (+) 556 Protein_3489 PRK06770 family protein -
  D7J84_RS18255 (D7J84_18305) - 3506932..3507078 (-) 147 WP_000803575.1 YycC family protein -
  D7J84_RS18260 (D7J84_18310) - 3507129..3507857 (+) 729 WP_000172585.1 glycerophosphodiester phosphodiesterase -
  D7J84_RS18265 (D7J84_18315) - 3507907..3508140 (-) 234 WP_001190210.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65803.92 Da        Isoelectric Point: 4.8627

>NTDB_id=317025 D7J84_RS18230 WP_000947761.1 3501642..3503381(+) (recN) [Bacillus thuringiensis strain QZL38]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKLDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEKEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=317025 D7J84_RS18230 WP_000947761.1 3501642..3503381(+) (recN) [Bacillus thuringiensis strain QZL38]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGTTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCATTTTGATGGGGATCGAATCGTTAAACAATTA
GATATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAGTTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGCTGGATGAAGAAAATGAAT
TAACTGAGGAACGATTACAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
GAATCATGATTCAATTGCAAATAGTTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAAAAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCGGACGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAGCCACTTTCAAAGGTTGCTTCTGGAGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACTTCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.276

100

0.603

Multiple sequence alignment