Detailed information NTG0317007

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: D7J84_RS11590
• Genome accession: NZ_CP032608
• Coordinates: 2255947..2257074 (-)
• Length: 375 a.a.
• NCBI ID: WP_000470745.1
• Uniprot ID: A0A9W5QA17
• Organism: Bacillus thuringiensis strain QZL38
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2250947..2262074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7J84_RS11580 (D7J84_11610)	gyrA	2251426..2253897 (-)	2472	WP_001282864.1	DNA gyrase subunit A	-
D7J84_RS11585 (D7J84_11615)	gyrB	2253986..2255908 (-)	1923	WP_000435983.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
D7J84_RS11590 (D7J84_11620)	recF	2255947..2257074 (-)	1128	WP_000470745.1	DNA replication/repair protein RecF	Machinery gene
D7J84_RS11595 (D7J84_11625)	yaaA	2257087..2257299 (-)	213	WP_000821365.1	S4 domain-containing protein YaaA	-
D7J84_RS11600 (D7J84_11630)	dnaN	2257427..2258572 (-)	1146	WP_001212884.1	DNA polymerase III subunit beta	-
D7J84_RS11605 (D7J84_11635)	dnaA	2258751..2260091 (-)	1341	WP_000428017.1	chromosomal replication initiator protein DnaA	-
D7J84_RS11610 (D7J84_11640)	rpmH	2260656..2260790 (+)	135	WP_000831901.1	50S ribosomal protein L34	-
D7J84_RS11615 (D7J84_11645)	rnpA	2260867..2261214 (+)	348	WP_000726621.1	ribonuclease P protein component	-
D7J84_RS11620 (D7J84_11650)	spoIIIJ	2261267..2262043 (+)	777	WP_000727734.1	YidC family membrane integrase SpoIIIJ	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43362.67 Da
• Isoelectric Point: 6.6001

>NTDB_id=317007 D7J84_RS11590 WP_000470745.1 2255947..2257074(-) (recF) [Bacillus thuringiensis strain QZL38]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide

• Length: 1128 bp

>NTDB_id=317007 D7J84_RS11590 WP_000470745.1 2255947..2257074(-) (recF) [Bacillus thuringiensis strain QZL38]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCAAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAGATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCTCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	66.576	98.133	0.653