Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D7J84_RS11385 Genome accession   NZ_CP032608
Coordinates   2219478..2219762 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain QZL38     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214478..2224762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7J84_RS11370 (D7J84_11400) rnmV 2215305..2215862 (-) 558 WP_000692835.1 ribonuclease M5 -
  D7J84_RS11375 (D7J84_11405) - 2216076..2216843 (-) 768 WP_000895851.1 TatD family hydrolase -
  D7J84_RS11380 (D7J84_11410) metG 2217010..2219019 (-) 2010 WP_074594809.1 methionine--tRNA ligase -
  D7J84_RS11385 (D7J84_11415) abrB 2219478..2219762 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D7J84_RS11390 (D7J84_11420) rsmI 2219783..2220658 (-) 876 WP_000267817.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D7J84_RS11395 (D7J84_11425) - 2220627..2220917 (-) 291 WP_000414352.1 GIY-YIG nuclease family protein -
  D7J84_RS11400 (D7J84_11430) - 2220904..2221644 (-) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D7J84_RS11405 (D7J84_11435) yabA 2221727..2222077 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  D7J84_RS11410 (D7J84_11440) - 2222092..2222919 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  D7J84_RS11415 (D7J84_11445) holB 2222925..2223908 (-) 984 WP_000169564.1 DNA polymerase III subunit delta' -
  D7J84_RS11420 (D7J84_11450) tmk 2223944..2224570 (-) 627 WP_000677219.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=317005 D7J84_RS11385 WP_000843036.1 2219478..2219762(+) (abrB) [Bacillus thuringiensis strain QZL38]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=317005 D7J84_RS11385 WP_000843036.1 2219478..2219762(+) (abrB) [Bacillus thuringiensis strain QZL38]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment