Detailed information NTG0317003

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E1949_RS08380
• Genome accession: NZ_CP039160
• Coordinates: 1666909..1667595 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain Lr6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1661909..1672595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1949_RS08335 (E1949_08475)	rpmA	1662623..1662907 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
E1949_RS08340 (E1949_08480)	-	1662919..1663239 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E1949_RS08345 (E1949_08485)	rplU	1663245..1663553 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
E1949_RS08350 (E1949_08490)	mreD	1663846..1664376 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
E1949_RS08355 (E1949_08495)	mreC	1664376..1665218 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
E1949_RS08360 (E1949_08500)	-	1665417..1665536 (-)	120	WP_000840602.1	hypothetical protein	-
E1949_RS08365 (E1949_08505)	-	1665610..1666083 (-)	474	WP_001236734.1	DUF4930 family protein	-
E1949_RS08370 (E1949_08510)	-	1666243..1666440 (+)	198	WP_000025835.1	hypothetical protein	-
E1949_RS08375 (E1949_08515)	-	1666557..1666841 (-)	285	WP_000171866.1	hypothetical protein	-
E1949_RS08380 (E1949_08520)	ysxA/radC	1666909..1667595 (-)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
E1949_RS08385 (E1949_08525)	-	1667592..1668299 (-)	708	WP_000261121.1	A24 family peptidase	-
E1949_RS08390 (E1949_08535)	-	1668569..1669840 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
E1949_RS08395 (E1949_08540)	-	1669853..1672483 (-)	2631	WP_000425351.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=317003 E1949_RS08380 WP_000692886.1 1666909..1667595(-) (ysxA/radC) [Staphylococcus aureus strain Lr6]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=317003 E1949_RS08380 WP_000692886.1 1666909..1667595(-) (ysxA/radC) [Staphylococcus aureus strain Lr6]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATTATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTGTTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377