Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D7J84_RS03855 Genome accession   NZ_CP032608
Coordinates   744691..745293 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis strain QZL38     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739691..750293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7J84_RS03815 (D7J84_03820) gpsB 739988..740323 (-) 336 WP_000622431.1 cell division regulator GpsB -
  D7J84_RS03820 (D7J84_03825) - 740421..740975 (-) 555 WP_000864832.1 DUF1273 domain-containing protein -
  D7J84_RS03825 (D7J84_03830) - 741032..741463 (-) 432 WP_000546272.1 CotD family spore coat protein -
  D7J84_RS03830 (D7J84_03835) - 741620..742147 (-) 528 WP_000487629.1 YppG family protein -
  D7J84_RS03835 (D7J84_03840) - 742325..742516 (+) 192 WP_000242653.1 YppF family protein -
  D7J84_RS03840 (D7J84_03845) - 742543..742887 (-) 345 WP_000786940.1 YppE family protein -
  D7J84_RS03845 (D7J84_03850) - 742903..743145 (-) 243 WP_001252036.1 hypothetical protein -
  D7J84_RS33790 - 743231..743410 (+) 180 WP_001987054.1 hypothetical protein -
  D7J84_RS03850 (D7J84_03855) - 743562..744587 (-) 1026 WP_000495646.1 DUF2515 domain-containing protein -
  D7J84_RS03855 (D7J84_03860) recU 744691..745293 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  D7J84_RS03860 (D7J84_03865) - 745360..748053 (+) 2694 WP_001283096.1 PBP1A family penicillin-binding protein -
  D7J84_RS03865 (D7J84_03870) - 748080..748598 (-) 519 WP_000442648.1 YpoC family protein -
  D7J84_RS03870 (D7J84_03875) nth 748602..749249 (-) 648 WP_000933036.1 endonuclease III -
  D7J84_RS03875 (D7J84_03880) dnaD 749265..749972 (-) 708 WP_000727172.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=316987 D7J84_RS03855 WP_000155598.1 744691..745293(+) (recU) [Bacillus thuringiensis strain QZL38]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=316987 D7J84_RS03855 WP_000155598.1 744691..745293(+) (recU) [Bacillus thuringiensis strain QZL38]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment