Detailed information NTG0031697

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECO26_RS19950
• Genome accession: NC_013361
• Coordinates: 3749675..3750667 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081564.1
• Uniprot ID: -
• Organism: Escherichia coli O26:H11 str. 11368
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3744675..3755667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECO26_RS19925 (ECO26_3805)	ygbN	3745330..3746694 (+)	1365	WP_000104439.1	GntP family transporter	-
ECO26_RS19930 (ECO26_3806)	-	3746733..3746969 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ECO26_RS19935 (ECO26_3807)	-	3746980..3748407 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ECO26_RS19940 (ECO26_3808)	-	3748407..3749000 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ECO26_RS19945 (ECO26_3809)	-	3749147..3749554 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
ECO26_RS19950 (ECO26_3810)	rpoS	3749675..3750667 (-)	993	WP_000081564.1	RNA polymerase sigma factor RpoS	Regulator
ECO26_RS19955 (ECO26_3811)	nlpD	3750730..3751824 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ECO26_RS19960 (ECO26_3812)	pcm	3752009..3752635 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECO26_RS19965 (ECO26_3813)	surE	3752629..3753390 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECO26_RS19970 (ECO26_3814)	truD	3753371..3754420 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ECO26_RS19975 (ECO26_3815)	ispF	3754417..3754896 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECO26_RS19980 (ECO26_3816)	ispD	3754896..3755606 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37946.76 Da
• Isoelectric Point: 4.5597

>NTDB_id=31697 ECO26_RS19950 WP_000081564.1 3749675..3750667(-) (rpoS) [Escherichia coli O26:H11 str. 11368]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEESAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=31697 ECO26_RS19950 WP_000081564.1 3749675..3750667(-) (rpoS) [Escherichia coli O26:H11 str. 11368]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGAGCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712