Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D7H65_RS09610 Genome accession   NZ_CP032569
Coordinates   1994810..1995445 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain BA7823     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1989810..2000445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7H65_RS09595 (D7H65_09600) - 1990517..1991761 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  D7H65_RS09600 (D7H65_09605) - 1991849..1992382 (-) 534 WP_033990447.1 DUF2062 domain-containing protein -
  D7H65_RS09605 (D7H65_09610) - 1992513..1994737 (+) 2225 Protein_1844 DNA internalization-related competence protein ComEC/Rec2 -
  D7H65_RS09610 (D7H65_09615) exbB 1994810..1995445 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D7H65_RS09615 (D7H65_09620) - 1995442..1995882 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  D7H65_RS09620 (D7H65_09625) lpxK 1995882..1996879 (+) 998 Protein_1847 tetraacyldisaccharide 4'-kinase -
  D7H65_RS09625 (D7H65_09630) - 1996917..1997102 (+) 186 WP_003091157.1 Trm112 family protein -
  D7H65_RS09630 (D7H65_09635) kdsB 1997102..1997866 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D7H65_RS09635 (D7H65_09640) - 1997866..1998330 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  D7H65_RS09640 (D7H65_09645) murB 1998327..1999346 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=316962 D7H65_RS09610 WP_003091163.1 1994810..1995445(+) (exbB) [Pseudomonas aeruginosa strain BA7823]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=316962 D7H65_RS09610 WP_003091163.1 1994810..1995445(+) (exbB) [Pseudomonas aeruginosa strain BA7823]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment