Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D6219_RS11295 Genome accession   NZ_CP032542
Coordinates   2011180..2012535 (-) Length   451 a.a.
NCBI ID   WP_010958217.1    Uniprot ID   -
Organism   Coxiella burnetii strain 2014-PE-15890     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006180..2017535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6219_RS11270 (D6219_11295) - 2006912..2007628 (+) 717 WP_010958214.1 S24 family peptidase -
  D6219_RS11275 (D6219_11300) nusB 2007751..2008167 (-) 417 WP_010958215.1 transcription antitermination factor NusB -
  D6219_RS11280 (D6219_11305) nrdR 2008157..2008630 (-) 474 WP_005771735.1 transcriptional regulator NrdR -
  D6219_RS11285 (D6219_11310) glyA 2008630..2009889 (-) 1260 WP_010958216.1 serine hydroxymethyltransferase -
  D6219_RS11290 (D6219_11315) - 2010252..2011088 (+) 837 WP_040953368.1 hypothetical protein -
  D6219_RS11295 (D6219_11320) radA 2011180..2012535 (-) 1356 WP_010958217.1 DNA repair protein RadA Machinery gene
  D6219_RS11300 (D6219_11325) - 2012615..2012758 (+) 144 WP_005772979.1 hypothetical protein -
  D6219_RS12775 - 2012755..2012823 (-) 69 Protein_2244 hypothetical protein -
  D6219_RS11305 (D6219_11330) hemB 2012908..2013912 (-) 1005 WP_012220651.1 porphobilinogen synthase -
  D6219_RS11310 (D6219_11335) coxDFB4 2013930..2014382 (-) 453 WP_005771746.1 Dot/Icm type IV secretion system effector CoxDFB4 -
  D6219_RS11315 (D6219_11340) - 2014367..2014480 (+) 114 WP_010958219.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48779.04 Da        Isoelectric Point: 7.7912

>NTDB_id=316888 D6219_RS11295 WP_010958217.1 2011180..2012535(-) (radA) [Coxiella burnetii strain 2014-PE-15890]
MTKTKTIFSCQHCGSQYAQWQGQCRDCGEWNSIVEEVTVKKSTHRASGFAGAQSVPILLSNVSMQSQPRLATGLAEFDHV
LGGGLVSDSVVLIGGDPGVGKSTLLLQILCQISRNYSTLYISGEESLQQIALRAQRLQLPQDKLTLLAETHIEQILVLAE
QSHPQVMVIDSIQTVYTDTVPSAPGGVGQVRESAAQLVRFAKQKGIALFIVGHVTKEGAIAGPRVLEHMVDAVLYFEGKN
DSRFRVIRAVKNRFGAVNEIGVFAMTNAGLKQVNNPSAIFLSRYETPVSGSVVTVTWEGSRPLLVEVQALVDESHLANPR
RVTVGLEQNRLSMLLATLHRHGGVPTYDQDVFVNAVGGLRIVETGADLPVLLAVLSSLRNKPLPSDLIVFGEVGLAGEIR
PVPSGQERIKEAVKHGFKRAIVPKANAPKDAPEGMEIVAADKLQSVLNYNY

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=316888 D6219_RS11295 WP_010958217.1 2011180..2012535(-) (radA) [Coxiella burnetii strain 2014-PE-15890]
ATGACCAAAACAAAAACTATTTTTTCCTGCCAGCATTGCGGTTCGCAATACGCGCAATGGCAAGGGCAGTGTCGTGATTG
TGGAGAGTGGAATTCCATTGTTGAAGAAGTGACGGTTAAAAAATCCACGCATCGTGCGAGCGGCTTTGCGGGCGCGCAGT
CCGTTCCTATCTTGCTAAGTAACGTTAGCATGCAATCGCAACCGCGGTTGGCGACGGGGCTTGCAGAATTCGATCATGTC
CTTGGTGGAGGGTTAGTTTCTGATTCGGTGGTATTAATCGGCGGTGATCCCGGCGTGGGTAAATCCACTTTATTGCTGCA
AATTTTGTGCCAAATTAGCAGAAATTATTCCACTTTATACATCAGCGGTGAGGAATCGTTGCAACAAATTGCATTGCGAG
CGCAGCGACTGCAATTACCTCAAGATAAATTAACCTTGTTGGCAGAAACTCATATCGAGCAAATATTAGTGCTGGCGGAA
CAATCGCACCCGCAAGTGATGGTAATCGATTCCATCCAAACGGTGTACACCGACACCGTTCCTTCAGCGCCGGGCGGAGT
GGGCCAAGTGCGGGAAAGTGCAGCGCAATTGGTGCGTTTTGCGAAACAAAAAGGAATCGCTTTATTCATCGTAGGCCATG
TGACAAAAGAAGGCGCTATTGCAGGCCCTCGCGTTTTAGAACACATGGTCGATGCCGTCCTTTATTTTGAAGGGAAAAAT
GACAGTCGTTTTCGCGTTATCCGCGCGGTTAAAAATCGCTTTGGCGCCGTTAATGAAATTGGCGTATTTGCGATGACTAA
CGCGGGATTGAAGCAAGTGAATAATCCCTCGGCGATTTTTCTATCGCGCTATGAAACGCCGGTTTCCGGCAGCGTGGTTA
CCGTAACGTGGGAAGGCAGCCGCCCTTTGCTGGTGGAAGTGCAAGCCTTGGTAGACGAAAGCCATCTTGCAAATCCTCGC
CGAGTCACCGTCGGTTTAGAACAAAATCGTTTATCCATGTTATTAGCCACATTGCACCGCCACGGTGGTGTTCCTACTTA
TGACCAAGACGTATTTGTTAACGCCGTCGGCGGTCTACGCATTGTGGAAACAGGCGCTGATCTTCCCGTTTTATTAGCGG
TATTATCGAGCTTGCGCAACAAGCCATTACCTTCAGATTTAATCGTTTTTGGGGAAGTTGGCCTCGCCGGTGAAATTCGT
CCCGTTCCGAGCGGACAAGAACGAATTAAAGAAGCAGTAAAACACGGTTTCAAGCGCGCGATCGTTCCAAAAGCCAATGC
GCCTAAAGACGCCCCGGAAGGAATGGAAATCGTGGCGGCAGATAAATTGCAGAGTGTATTAAATTATAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-218)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.903

100

0.481
  radA Streptococcus pneumoniae Rx1

45.312

99.335

0.45
  radA Streptococcus pneumoniae D39

45.312

99.335

0.45
  radA Streptococcus pneumoniae R6

45.312

99.335

0.45
  radA Streptococcus pneumoniae TIGR4

45.312

99.335

0.45
  radA Streptococcus mitis NCTC 12261

45.312

99.335

0.45
  radA Streptococcus mitis SK321

45.312

99.335

0.45

Multiple sequence alignment