Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPG27_RS06840 Genome accession   NC_011333
Coordinates   1411802..1413115 (-) Length   437 a.a.
NCBI ID   WP_000653635.1    Uniprot ID   B5Z908
Organism   Helicobacter pylori G27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406802..1418115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS06810 (HPG27_1303) nadC 1407266..1408087 (-) 822 WP_000404070.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPG27_RS06815 (HPG27_1304) nadA 1408087..1409097 (-) 1011 WP_001141825.1 quinolinate synthase NadA -
  HPG27_RS06820 (HPG27_1305) - 1409087..1409890 (-) 804 WP_000226229.1 phosphatidylserine decarboxylase -
  HPG27_RS06825 (HPG27_1306) - 1409884..1410390 (-) 507 WP_000953098.1 hypothetical protein -
  HPG27_RS06830 (HPG27_1307) - 1410403..1410897 (-) 495 WP_001872943.1 hypothetical protein -
  HPG27_RS06835 (HPG27_1308) mqnP 1410890..1411733 (-) 844 Protein_1324 menaquinone biosynthesis prenyltransferase MqnP -
  HPG27_RS06840 (HPG27_1309) comEC/comE3 1411802..1413115 (-) 1314 WP_000653635.1 ComEC/Rec2 family competence protein Machinery gene
  HPG27_RS06845 (HPG27_1310) - 1413112..1414578 (-) 1467 WP_000349729.1 replicative DNA helicase -
  HPG27_RS06850 (HPG27_1311) - 1414589..1415989 (-) 1401 WP_000954007.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPG27_RS06855 (HPG27_1312) crdS 1415992..1417194 (-) 1203 WP_079990390.1 copper-sensing histidine kinase CrdS -
  HPG27_RS06860 (HPG27_1313) crdR 1417160..1417801 (-) 642 WP_001169789.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50343.29 Da        Isoelectric Point: 9.9128

>NTDB_id=31688 HPG27_RS06840 WP_000653635.1 1411802..1413115(-) (comEC/comE3) [Helicobacter pylori G27]
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAHFFGRIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLARSFQVISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLNMPLTIPTISIPSPLWLLGVHLFLT
IVSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=31688 HPG27_RS06840 WP_000653635.1 1411802..1413115(-) (comEC/comE3) [Helicobacter pylori G27]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATTCTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCATGCGCATTTTTTTGGCAGGATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGTTCATTCCAACGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCGTTTCAAGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCCATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCGCC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTGTGAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z908

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959

Multiple sequence alignment