Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D6022_RS20100 Genome accession   NZ_CP032538
Coordinates   3780618..3782402 (-) Length   594 a.a.
NCBI ID   WP_318656126.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3775618..3787402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS20065 - 3776003..3776638 (-) 636 WP_009328818.1 GTP pyrophosphokinase family protein -
  D6022_RS20070 - 3776670..3777035 (-) 366 WP_009328819.1 hypothetical protein -
  D6022_RS20075 - 3777166..3777738 (+) 573 WP_009328820.1 CYTH domain-containing protein -
  D6022_RS20080 - 3777751..3778404 (+) 654 WP_009328821.1 lytic transglycosylase domain-containing protein -
  D6022_RS20085 - 3778686..3779084 (+) 399 WP_003180652.1 thiol management oxidoreductase -
  D6022_RS20090 spxH 3779081..3779983 (+) 903 WP_009328822.1 protease adaptor protein SpxH -
  D6022_RS24395 - 3780394..3780561 (+) 168 WP_009328823.1 hypothetical protein -
  D6022_RS20100 pepF 3780618..3782402 (-) 1785 WP_318656126.1 oligoendopeptidase F Regulator
  D6022_RS20110 - 3782659..3783807 (-) 1149 WP_017474218.1 competence protein CoiA family protein -
  D6022_RS20115 - 3783925..3785520 (+) 1596 WP_017474219.1 sensor histidine kinase -
  D6022_RS20120 - 3785543..3786259 (+) 717 WP_009328827.1 response regulator -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68641.03 Da        Isoelectric Point: 4.7981

>NTDB_id=316861 D6022_RS20100 WP_318656126.1 3780618..3782402(-) (pepF) [Bacillus licheniformis strain MT-B06]
MKQEDTWRLEDIFPSDDAWNEEFQAVKELLPKLSEFKGKLGHSADDLYEALTYQDKVMERLGKLYTYAHMRYDQDTGNSF
YQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEEEEGILAEASDVLSSP
SNTFGMLNNADMEFPEITDENGEKVQLTHGNYITFLESENRDVRRAAFKAVYETYGRFKNTLASTLSGAVKKDNFYAKVK
HYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVEIRKKVLELDEVHMYDLYTPLVKDSGMKVTYEQAKDYMLKGL
APLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHSVHSYYTRKYQPYPYG
NYSIFVAEVASTTNEALLGEYLLNTIEDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHVKAQEGEPLTPELLTSIYY
DLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFLKAGSSDYPIEVLKKA
GVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=316861 D6022_RS20100 WP_318656126.1 3780618..3782402(-) (pepF) [Bacillus licheniformis strain MT-B06]
GTGAAGCAAGAAGACACGTGGAGACTGGAGGATATCTTCCCGTCAGATGACGCTTGGAACGAGGAATTTCAAGCCGTTAA
AGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCAAGCTCGGCCATTCCGCCGATGATTTATATGAAGCGCTGACTTATC
AGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTATACTTACGCTCATATGCGCTATGATCAGGATACGGGAAATTCTTTT
TACCAAGGTCTCAATGATAAAGCGGCGAACCTCTATACTCAGGCTGCGAGCGCCACGGCCTACATGGTGCCGGAAATATT
ATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGTTGGAAAAAGAGGAATTAAAGCTTTACTCACACGCTCTCGAAGAAA
TCAATAAAGAGCGCCCTCATGTGCTTAGCGAGGAAGAGGAAGGGATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTCCT
TCCAATACATTCGGCATGCTGAATAACGCCGATATGGAATTTCCGGAGATCACCGATGAAAACGGAGAAAAGGTGCAGCT
CACACACGGCAATTATATCACCTTTTTGGAAAGCGAGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCCGTTTATGAAA
CATACGGCCGCTTTAAAAACACGCTAGCTTCCACGCTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAA
CATTATAAATCGGCGCGGGAAGCTGCCTTGTCGCGCAACAGCATTCCTGAAGAAGTCTACGACAATCTTGTCAGCACGAT
CAACAAGCATCTCCCGCTTCTTCACCGCTATGTTGAGATTAGAAAAAAAGTGCTTGAGCTTGATGAAGTGCACATGTATG
ACCTGTATACCCCTCTGGTCAAGGATTCTGGAATGAAAGTCACTTACGAGCAGGCAAAGGACTATATGCTGAAGGGTCTG
GCGCCTTTGGGGGAAGAATATTCATCCATCCTGAAAGAAGGATTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGG
AAAACGAAGCGGCGCCTATTCTTCAGGAACTTACGGAACCAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAACA
ATCTGTTTACGCTCGTCCATGAATTCGGCCATTCCGTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGT
AACTACAGCATTTTCGTAGCCGAAGTTGCTTCTACGACGAATGAAGCGCTGTTGGGAGAATACCTGCTGAATACAATCGA
AGATGAAAAACAGCGGCTCTATATTTTGAATCATATGCTCGAAGGCTTTAAAGGAACGGTTTTCAGACAGACGATGTTTG
CCGAATTTGAACATGAGATCCATGTCAAAGCCCAGGAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATATACTAT
GATTTGAATAAGAAATATTTCGGAGACAATATTGAGATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATTCCGCATTT
CTATTACAATTATTATGTATATCAGTATGCGACAGGCTTCAGTGCAGCTCAGGCGCTCAGCCAGCAGATTTTAAAAGAAG
GCAAATCGGCTGTTGACCGCTATATTGAGTTCTTGAAAGCTGGAAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCC
GGCGTCGATATGACGTCTTCAGAGCCGATCGAAGCTGCGTGCAAAAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAACT
CCTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(105-174)

Peptidase family M3 (Peptidase_M3)

(195-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.361

98.99

0.508

Multiple sequence alignment