Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D6022_RS18585 Genome accession   NZ_CP032538
Coordinates   3496834..3497121 (-) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain MT-B06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3491834..3502121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS18570 ade 3492753..3494474 (-) 1722 WP_003181389.1 adenine deaminase -
  D6022_RS18575 - 3494602..3495264 (-) 663 WP_003181388.1 TrkA family potassium uptake protein -
  D6022_RS18580 - 3495329..3496666 (-) 1338 WP_003181386.1 ATP-binding protein -
  D6022_RS18585 abrB 3496834..3497121 (-) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D6022_RS18590 mreBH 3497428..3498435 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  D6022_RS18595 - 3498509..3498639 (+) 131 Protein_3649 protein YkpC -
  D6022_RS18600 - 3498730..3499962 (+) 1233 WP_003181374.1 aminopeptidase -
  D6022_RS18605 - 3500100..3500474 (-) 375 WP_003181373.1 DUF4440 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=316856 D6022_RS18585 WP_003181383.1 3496834..3497121(-) (abrB) [Bacillus licheniformis strain MT-B06]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=316856 D6022_RS18585 WP_003181383.1 3496834..3497121(-) (abrB) [Bacillus licheniformis strain MT-B06]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment