Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D6022_RS16750 Genome accession   NZ_CP032538
Coordinates   3143223..3143651 (-) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   A0A1Y0YFI7
Organism   Bacillus licheniformis strain MT-B06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3138223..3148651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS16725 tkt 3138805..3140808 (-) 2004 WP_009328229.1 transketolase -
  D6022_RS16730 - 3140975..3141208 (-) 234 WP_003182231.1 DUF896 domain-containing protein -
  D6022_RS16735 - 3141274..3141921 (-) 648 WP_003182227.1 recombinase family protein -
  D6022_RS16740 yneA 3141940..3142251 (-) 312 WP_003182225.1 cell division suppressor protein YneA -
  D6022_RS16745 lexA 3142404..3143027 (+) 624 WP_003182222.1 transcriptional repressor LexA -
  D6022_RS16750 nucA/comI 3143223..3143651 (-) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D6022_RS16755 - 3144010..3144849 (-) 840 WP_003182218.1 thymidylate synthase -
  D6022_RS16760 - 3144909..3145670 (-) 762 WP_003182215.1 hypothetical protein -
  D6022_RS16765 - 3145761..3146594 (-) 834 WP_003182213.1 prohibitin family protein -
  D6022_RS24010 - 3146587..3146727 (-) 141 WP_003182211.1 hypothetical protein -
  D6022_RS16770 wrbA 3147048..3147659 (-) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  D6022_RS16775 - 3147860..3148468 (-) 609 WP_009328237.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=316850 D6022_RS16750 WP_003182220.1 3143223..3143651(-) (nucA/comI) [Bacillus licheniformis strain MT-B06]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=316850 D6022_RS16750 WP_003182220.1 3143223..3143651(-) (nucA/comI) [Bacillus licheniformis strain MT-B06]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCACGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YFI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521

Multiple sequence alignment