Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   D6022_RS12960 Genome accession   NZ_CP032538
Coordinates   2465156..2465956 (+) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2460156..2470956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS12940 - 2460178..2461023 (+) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  D6022_RS12945 ahrC 2461189..2461638 (+) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  D6022_RS12950 recN 2461670..2463400 (+) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  D6022_RS12955 spoIVB 2463550..2464866 (+) 1317 WP_044051837.1 SpoIVB peptidase -
  D6022_RS12960 spo0A 2465156..2465956 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  D6022_RS12965 - 2466329..2466625 (+) 297 WP_003183359.1 antimicrobial peptide LCI -
  D6022_RS12970 - 2466753..2467139 (+) 387 WP_009327922.1 serine O-acetyltransferase -
  D6022_RS12975 - 2467470..2468900 (+) 1431 WP_016886315.1 IS1182 family transposase -
  D6022_RS12980 - 2469174..2469494 (+) 321 WP_003183355.1 hypothetical protein -
  D6022_RS12985 - 2469530..2470150 (+) 621 WP_003183353.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=316847 D6022_RS12960 WP_003183361.1 2465156..2465956(+) (spo0A) [Bacillus licheniformis strain MT-B06]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=316847 D6022_RS12960 WP_003183361.1 2465156..2465956(+) (spo0A) [Bacillus licheniformis strain MT-B06]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment