Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D6022_RS12745 Genome accession   NZ_CP032538
Coordinates   2426957..2427292 (-) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain MT-B06     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2421957..2432292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS12700 comGD 2422240..2422677 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  D6022_RS12705 comGE 2422661..2423008 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  D6022_RS12710 comGF 2423034..2423405 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  D6022_RS12715 comGG 2423418..2423783 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  D6022_RS12720 - 2423872..2424054 (+) 183 WP_003183456.1 YqzE family protein -
  D6022_RS12725 - 2424078..2424398 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  D6022_RS12730 tapA 2424675..2425403 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  D6022_RS12735 sipW 2425400..2425984 (+) 585 WP_003183449.1 signal peptidase I SipW -
  D6022_RS12740 tasA 2426058..2426852 (+) 795 WP_003183447.1 biofilm matrix protein TasA -
  D6022_RS12745 sinR 2426957..2427292 (-) 336 WP_025804940.1 transcriptional regulator SinR Regulator
  D6022_RS12750 sinI 2427326..2427502 (-) 177 WP_003183444.1 anti-repressor SinI Regulator
  D6022_RS12755 - 2427693..2428487 (-) 795 WP_003183441.1 YqhG family protein -
  D6022_RS12760 - 2428494..2430173 (-) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  D6022_RS12765 gcvT 2430766..2431860 (+) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=316844 D6022_RS12745 WP_025804940.1 2426957..2427292(-) (sinR) [Bacillus licheniformis strain MT-B06]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=316844 D6022_RS12745 WP_025804940.1 2426957..2427292(-) (sinR) [Bacillus licheniformis strain MT-B06]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment