Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D6022_RS07370 Genome accession   NZ_CP032538
Coordinates   1436319..1436603 (+) Length   94 a.a.
NCBI ID   WP_003185421.1    Uniprot ID   A0A1Y0XQV9
Organism   Bacillus licheniformis strain MT-B06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431319..1441603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS07335 - 1431448..1432587 (+) 1140 WP_017474706.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  D6022_RS07340 - 1432609..1433262 (+) 654 WP_009329612.1 ABC transporter permease -
  D6022_RS07345 opuCC 1433276..1434193 (+) 918 WP_009329611.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  D6022_RS07350 - 1434210..1434887 (+) 678 WP_017474705.1 ABC transporter permease -
  D6022_RS07355 - 1434935..1435333 (-) 399 WP_009329610.1 helix-turn-helix domain-containing protein -
  D6022_RS07360 - 1435503..1435904 (-) 402 WP_026080846.1 transcriptional regulator -
  D6022_RS07365 - 1436057..1436290 (+) 234 WP_085959538.1 helix-turn-helix transcriptional regulator -
  D6022_RS07370 abrB 1436319..1436603 (+) 285 WP_003185421.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D6022_RS07375 secG 1436774..1437004 (+) 231 WP_003185418.1 preprotein translocase subunit SecG -
  D6022_RS07380 - 1437145..1437891 (+) 747 WP_003185416.1 carboxylesterase -
  D6022_RS07385 rnr 1437905..1440208 (+) 2304 WP_003185414.1 ribonuclease R -
  D6022_RS07390 smpB 1440320..1440793 (+) 474 WP_009329604.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10486.36 Da        Isoelectric Point: 7.9620

>NTDB_id=316825 D6022_RS07370 WP_003185421.1 1436319..1436603(+) (abrB) [Bacillus licheniformis strain MT-B06]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=316825 D6022_RS07370 WP_003185421.1 1436319..1436603(+) (abrB) [Bacillus licheniformis strain MT-B06]
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0XQV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543

Multiple sequence alignment