Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D6022_RS05970 Genome accession   NZ_CP032538
Coordinates   1180237..1181190 (+) Length   317 a.a.
NCBI ID   WP_026080767.1    Uniprot ID   A0AB37GV26
Organism   Bacillus licheniformis strain MT-B06     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175237..1186190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS05955 - 1175298..1176725 (+) 1428 WP_009330185.1 HAMP domain-containing sensor histidine kinase -
  D6022_RS24735 - 1176758..1178463 (-) 1706 Protein_1145 methyl-accepting chemotaxis protein -
  D6022_RS05965 - 1178599..1179960 (-) 1362 WP_003178935.1 aspartate kinase -
  D6022_RS05970 ceuB 1180237..1181190 (+) 954 WP_026080767.1 ABC transporter permease Machinery gene
  D6022_RS05975 - 1181180..1182123 (+) 944 Protein_1148 iron chelate uptake ABC transporter family permease subunit -
  D6022_RS05980 - 1182123..1182881 (+) 759 WP_003178940.1 ABC transporter ATP-binding protein -
  D6022_RS05985 - 1182896..1183843 (+) 948 WP_003178942.1 siderophore ABC transporter substrate-binding protein -
  D6022_RS05990 - 1184012..1185433 (-) 1422 WP_003178944.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35170.57 Da        Isoelectric Point: 10.0856

>NTDB_id=316823 D6022_RS05970 WP_026080767.1 1180237..1181190(+) (ceuB) [Bacillus licheniformis strain MT-B06]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLKYKRVVNIGLIIVSIISSVVILTIGT
LPFLGLIIPNIVSIYRGDHLKDSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=316823 D6022_RS05970 WP_026080767.1 1180237..1181190(+) (ceuB) [Bacillus licheniformis strain MT-B06]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCATTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGACCTTTTCCGCTTTAATGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCAACCACCGCT
GGAACGATGGATTGGGCTCGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTAGTCAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATTT
TCATCCCTCTCGTCGGAATGATGCTCGGGAGCGTTGTCAGCGCCATCTCTACTTTCATGGCTTATCAGTACAATATTATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTCACGTTGGCCGGGATGGGGGAGTCATTTTCCATCAATCTTGGAT
TGAAATACAAGCGGGTGGTCAATATCGGGCTGATCATTGTATCTATTATATCGTCCGTCGTCATCCTGACGATCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATTTACAGGGGAGATCATTTGAAAGACAGCCTGCCTCACAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.685

0.511

Multiple sequence alignment