Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D6022_RS05615 Genome accession   NZ_CP032538
Coordinates   1079513..1079959 (-) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1074513..1084959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS05590 - 1075119..1075994 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  D6022_RS05595 - 1076178..1076730 (+) 553 Protein_1070 NAD(P)H-dependent oxidoreductase -
  D6022_RS05600 - 1076827..1077552 (+) 726 WP_003178804.1 AAA family ATPase -
  D6022_RS05605 - 1077622..1079058 (+) 1437 WP_017473999.1 glycoside hydrolase family 1 protein -
  D6022_RS05610 nin/comJ 1079097..1079495 (-) 399 WP_017473998.1 competence protein ComJ Regulator
  D6022_RS05615 nucA/comI 1079513..1079959 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D6022_RS23725 - 1080225..1080428 (+) 204 WP_003178812.1 hypothetical protein -
  D6022_RS05620 - 1080434..1081237 (+) 804 WP_017473997.1 protein kinase domain-containing protein -
  D6022_RS05625 - 1081257..1082941 (-) 1685 Protein_1077 methyl-accepting chemotaxis protein -
  D6022_RS05630 - 1083057..1083797 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=316822 D6022_RS05615 WP_009330244.1 1079513..1079959(-) (nucA/comI) [Bacillus licheniformis strain MT-B06]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=316822 D6022_RS05615 WP_009330244.1 1079513..1079959(-) (nucA/comI) [Bacillus licheniformis strain MT-B06]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment