Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D6022_RS03740 Genome accession   NZ_CP032538
Coordinates   737654..737944 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 732654..742944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS03700 - 732678..733007 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  D6022_RS03705 - 733019..733459 (+) 441 WP_003178158.1 YaaR family protein -
  D6022_RS03710 holB 733471..734460 (+) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  D6022_RS03715 - 734463..735290 (+) 828 WP_003178162.1 stage 0 sporulation family protein -
  D6022_RS03720 yabA 735305..735667 (+) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  D6022_RS03725 - 735732..736475 (+) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D6022_RS03730 - 736462..736755 (+) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  D6022_RS03735 rsmI 736730..737605 (+) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D6022_RS03740 abrB 737654..737944 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D6022_RS03745 metG 738452..740440 (+) 1989 WP_017474309.1 methionine--tRNA ligase -
  D6022_RS03750 - 740525..741292 (+) 768 WP_017474310.1 TatD family hydrolase -
  D6022_RS03755 - 741409..742734 (+) 1326 WP_003178178.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=316817 D6022_RS03740 WP_085959887.1 737654..737944(-) (abrB) [Bacillus licheniformis strain MT-B06]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=316817 D6022_RS03740 WP_085959887.1 737654..737944(-) (abrB) [Bacillus licheniformis strain MT-B06]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment