Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   D6022_RS03495 Genome accession   NZ_CP032538
Coordinates   691905..693017 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus licheniformis strain MT-B06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 686905..698017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS03470 rnpA 687634..687993 (-) 360 WP_003178055.1 ribonuclease P protein component -
  D6022_RS03475 rpmH 688078..688212 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  D6022_RS03480 dnaA 688852..690192 (+) 1341 WP_003178077.1 chromosomal replication initiator protein DnaA -
  D6022_RS03485 dnaN 690369..691505 (+) 1137 WP_003178080.1 DNA polymerase III subunit beta -
  D6022_RS03490 yaaA 691673..691888 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  D6022_RS03495 recF 691905..693017 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  D6022_RS03500 remB 693035..693277 (+) 243 WP_003178090.1 extracellular matrix regulator RemB -
  D6022_RS03505 gyrB 693337..695250 (+) 1914 WP_009330043.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  D6022_RS03510 gyrA 695441..697909 (+) 2469 WP_003178095.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=316815 D6022_RS03495 WP_003178089.1 691905..693017(+) (recF) [Bacillus licheniformis strain MT-B06]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=316815 D6022_RS03495 WP_003178089.1 691905..693017(+) (recF) [Bacillus licheniformis strain MT-B06]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886

Multiple sequence alignment