Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D6022_RS00635 Genome accession   NZ_CP032538
Coordinates   91847..92581 (-) Length   244 a.a.
NCBI ID   WP_017473895.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86847..97581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS00600 fliW 86998..87429 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  D6022_RS00605 - 87451..88017 (-) 567 WP_003185702.1 DUF6470 family protein -
  D6022_RS00610 flgL 88067..88978 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  D6022_RS00615 flgK 88989..90512 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  D6022_RS00620 - 90528..91004 (-) 477 WP_003185711.1 flagellar protein FlgN -
  D6022_RS00625 flgM 91023..91289 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  D6022_RS00630 - 91369..91788 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  D6022_RS00635 comFC 91847..92581 (-) 735 WP_017473895.1 amidophosphoribosyltransferase Machinery gene
  D6022_RS00640 - 92538..92822 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  D6022_RS00645 comFA 92877..94271 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  D6022_RS00650 - 94392..95234 (-) 843 WP_003185726.1 DegV family protein -
  D6022_RS00655 degU 95354..96043 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  D6022_RS00660 degS 96125..97282 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27837.25 Da        Isoelectric Point: 9.4494

>NTDB_id=316804 D6022_RS00635 WP_017473895.1 91847..92581(-) (comFC) [Bacillus licheniformis strain MT-B06]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWYSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=316804 D6022_RS00635 WP_017473895.1 91847..92581(-) (comFC) [Bacillus licheniformis strain MT-B06]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGTATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment