Detailed information NTG0316796

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E5N77_RS15470
• Genome accession: NZ_CP039123
• Coordinates: 3454945..3455943 (-)
• Length: 332 a.a.
• NCBI ID: WP_019326509.1
• Uniprot ID: A0ABW1XX86
• Organism: Streptomyces sp. SS52
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3449945..3460943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5N77_RS15450 (E5N77_15450)	-	3450193..3450954 (-)	762	WP_019326504.1	DeoR/GlpR family DNA-binding transcription regulator	-
E5N77_RS15455 (E5N77_15455)	-	3451213..3452733 (-)	1521	WP_136235688.1	MFS transporter	-
E5N77_RS15460 (E5N77_15460)	-	3452797..3453768 (+)	972	WP_136235689.1	YafY family protein	-
E5N77_RS15465 (E5N77_15465)	-	3453836..3454438 (-)	603	WP_225619885.1	TetR/AcrR family transcriptional regulator	-
E5N77_RS15470 (E5N77_15470)	rpoS	3454945..3455943 (-)	999	WP_019326509.1	sigma-70 family RNA polymerase sigma factor	Regulator
E5N77_RS15475 (E5N77_15475)	-	3456151..3456666 (+)	516	WP_136237082.1	GNAT family N-acetyltransferase	-
E5N77_RS15480 (E5N77_15480)	-	3456689..3457474 (-)	786	WP_247608027.1	class III extradiol ring-cleavage dioxygenase	-
E5N77_RS15485 (E5N77_15485)	-	3457567..3458082 (+)	516	WP_029393588.1	MarR family transcriptional regulator	-
E5N77_RS15490 (E5N77_15490)	-	3458198..3459742 (-)	1545	WP_046248980.1	MFS transporter	-
E5N77_RS15495 (E5N77_15495)	-	3459881..3460534 (-)	654	WP_175438013.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37212.91 Da
• Isoelectric Point: 4.8512

>NTDB_id=316796 E5N77_RS15470 WP_019326509.1 3454945..3455943(-) (rpoS) [Streptomyces sp. SS52]
MATRAVARRKSATGETADAATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDPRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=316796 E5N77_RS15470 WP_019326509.1 3454945..3455943(-) (rpoS) [Streptomyces sp. SS52]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACGGCCGACGCGGCAACCAGCGTCCGCGCCAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCACGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTTCTCGAAGGCTACGAGGAGACCGGGGCGGAC
GCCACCCGGGAGGAGCTCCAGGCCCTGATCGACGAGGGCGAGCGCGCGAAGGACGTCTTCATCCGCTCGAACCTCCGCCT
GGTCGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGCCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCGGACCAGTCGCGCACCATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTGGGCCGCATCCGGCGCGT
GCAGCGCGAGTTCAACCGGGAGCACGGGCGCGAGCCGGAGCCCGCGGAGATCGCCGCCGAGCTGGGCTCGACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCCGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGTACGC
TGACCGAGGTCGGCAAGGAGCACGGGCTGACCCGTGAGCGCATCCGGCAGATCGAGAAGCACGCGCTGCTCGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364