Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OEA_RS07055 Genome accession   NZ_CP032527
Coordinates   1384395..1384769 (-) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium NCT-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1379395..1389769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEA_RS07035 (OEA_08450) - 1379966..1380334 (-) 369 WP_016765180.1 helix-turn-helix domain-containing protein -
  OEA_RS07040 (OEA_08455) - 1380577..1381092 (+) 516 WP_016765179.1 enoyl-CoA hydratase/isomerase family protein -
  OEA_RS34760 - 1381232..1381357 (+) 126 WP_016765178.1 hypothetical protein -
  OEA_RS07045 (OEA_08460) helD 1381602..1383923 (+) 2322 WP_016765177.1 RNA polymerase recycling motor HelD -
  OEA_RS07050 (OEA_08465) comJ 1383952..1384359 (-) 408 WP_016765176.1 competence protein ComJ -
  OEA_RS07055 (OEA_08470) nucA/comI 1384395..1384769 (-) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OEA_RS07060 (OEA_08475) - 1385059..1385319 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  OEA_RS07065 (OEA_08480) - 1385476..1387425 (+) 1950 WP_016765174.1 FUSC family protein -
  OEA_RS07070 (OEA_08485) - 1387461..1388279 (-) 819 WP_013058559.1 squalene/phytoene synthase family protein -
  OEA_RS07075 (OEA_08490) - 1388605..1389276 (+) 672 WP_016765173.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=316770 OEA_RS07055 WP_223269005.1 1384395..1384769(-) (nucA/comI) [Priestia megaterium NCT-2]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=316770 OEA_RS07055 WP_223269005.1 1384395..1384769(-) (nucA/comI) [Priestia megaterium NCT-2]
ATGGGACATGCAGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAATTATGATGCGACACTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGTGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645

Multiple sequence alignment