Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPG27_RS00100 Genome accession   NC_011333
Coordinates   13757..14020 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori G27     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8757..19020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS00075 (HPG27_10) groES 9042..9398 (-) 357 WP_000671949.1 co-chaperone GroES -
  HPG27_RS00080 (HPG27_11) dnaG 9684..11363 (+) 1680 WP_000601603.1 DNA primase -
  HPG27_RS00085 (HPG27_12) - 11360..12412 (+) 1053 WP_000721178.1 MnmA/TRMU family protein -
  HPG27_RS00090 (HPG27_13) - 12502..13329 (+) 828 WP_001154912.1 DUF5718 family protein -
  HPG27_RS00095 (HPG27_14) comB2 13476..13757 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPG27_RS00100 (HPG27_15) comB3 13757..14020 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPG27_RS00105 (HPG27_16) comB4 14022..16385 (+) 2364 WP_000890552.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPG27_RS00110 (HPG27_17) - 16687..18027 (+) 1341 WP_001864262.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=31673 HPG27_RS00100 WP_000584956.1 13757..14020(+) (comB3) [Helicobacter pylori G27]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=31673 HPG27_RS00100 WP_000584956.1 13757..14020(+) (comB3) [Helicobacter pylori G27]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment