Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPG27_RS00095 Genome accession   NC_011333
Coordinates   13476..13757 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori G27     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8476..18757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS00075 (HPG27_10) groES 9042..9398 (-) 357 WP_000671949.1 co-chaperone GroES -
  HPG27_RS00080 (HPG27_11) dnaG 9684..11363 (+) 1680 WP_000601603.1 DNA primase -
  HPG27_RS00085 (HPG27_12) - 11360..12412 (+) 1053 WP_000721178.1 MnmA/TRMU family protein -
  HPG27_RS00090 (HPG27_13) - 12502..13329 (+) 828 WP_001154912.1 DUF5718 family protein -
  HPG27_RS00095 (HPG27_14) comB2 13476..13757 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPG27_RS00100 (HPG27_15) comB3 13757..14020 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPG27_RS00105 (HPG27_16) comB4 14022..16385 (+) 2364 WP_000890552.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPG27_RS00110 (HPG27_17) - 16687..18027 (+) 1341 WP_001864262.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=31672 HPG27_RS00095 WP_001272686.1 13476..13757(+) (comB2) [Helicobacter pylori G27]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=31672 HPG27_RS00095 WP_001272686.1 13476..13757(+) (comB2) [Helicobacter pylori G27]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment