Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ECO26_RS07175 | Genome accession | NC_013361 |
| Coordinates | 1383251..1383727 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O26:H11 str. 11368 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1378251..1388727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECO26_RS07150 (ECO26_1355) | - | 1379529..1380434 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| ECO26_RS07155 (ECO26_1356) | - | 1380431..1381501 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| ECO26_RS07165 (ECO26_1357) | - | 1381841..1382659 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| ECO26_RS07170 (ECO26_1358) | - | 1382750..1383235 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| ECO26_RS07175 (ECO26_1359) | radC | 1383251..1383727 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| ECO26_RS07180 (ECO26_1360) | - | 1383790..1384011 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| ECO26_RS07190 (ECO26_1361) | - | 1384174..1384548 (+) | 375 | WP_001280953.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ECO26_RS07195 (ECO26_1362) | - | 1384595..1384969 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| ECO26_RS07200 (ECO26_1363) | - | 1384966..1385457 (+) | 492 | WP_000976857.1 | DUF5983 family protein | - |
| ECO26_RS07205 (ECO26_1364) | - | 1385469..1385666 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| ECO26_RS07210 (ECO26_1365) | - | 1385751..1386593 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| ECO26_RS07220 (ECO26_1366) | ghrA | 1387064..1388002 (+) | 939 | WP_000351317.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=31672 ECO26_RS07175 WP_001186738.1 1383251..1383727(+) (radC) [Escherichia coli O26:H11 str. 11368]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=31672 ECO26_RS07175 WP_001186738.1 1383251..1383727(+) (radC) [Escherichia coli O26:H11 str. 11368]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |