Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM357_RS16490 Genome accession   NZ_CP032523
Coordinates   3248406..3249035 (+) Length   209 a.a.
NCBI ID   WP_134812179.1    Uniprot ID   -
Organism   Shigella sonnei strain AR_0030     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3243406..3254035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM357_RS16470 (AM357_17525) - 3243809..3245569 (-) 1761 WP_000156526.1 Lon protease family protein -
  AM357_RS16475 (AM357_17530) matP 3245755..3246207 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM357_RS16480 (AM357_17535) ompA 3246283..3247323 (-) 1041 WP_000750416.1 porin OmpA -
  AM357_RS16485 (AM357_17545) sulA 3247678..3248187 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM357_RS16490 (AM357_17550) sxy/tfoX 3248406..3249035 (+) 630 WP_134812179.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM357_RS16495 (AM357_17555) yccS 3248998..3251160 (-) 2163 WP_000875023.1 YccS family putative transporter -
  AM357_RS16500 (AM357_17560) - 3251170..3251616 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AM357_RS16505 (AM357_17565) helD 3251739..3253793 (+) 2055 WP_005145732.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24119.99 Da        Isoelectric Point: 9.2180

>NTDB_id=316692 AM357_RS16490 WP_134812179.1 3248406..3249035(+) (sxy/tfoX) [Shigella sonnei strain AR_0030]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRSTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=316692 AM357_RS16490 WP_134812179.1 3248406..3249035(+) (sxy/tfoX) [Shigella sonnei strain AR_0030]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAGTACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment