Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   D6I99_RS06815 Genome accession   NZ_CP032522
Coordinates   1319437..1320618 (-) Length   393 a.a.
NCBI ID   WP_136696354.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314437..1325618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS06790 fliL 1315575..1316111 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  D6I99_RS06795 acpS 1316111..1316458 (+) 348 WP_002779165.1 holo-ACP synthase -
  D6I99_RS06800 - 1316461..1316883 (-) 423 WP_002779166.1 hypothetical protein -
  D6I99_RS06805 - 1316880..1318250 (-) 1371 WP_002783822.1 cytochrome P450 -
  D6I99_RS06810 - 1318247..1319368 (-) 1122 WP_136696353.1 DUF829 domain-containing protein -
  D6I99_RS06815 kpsS 1319437..1320618 (-) 1182 WP_136696354.1 capsule biosynthesis protein Regulator
  D6I99_RS06820 - 1320615..1322642 (-) 2028 WP_136696355.1 capsular polysaccharide biosynthesis protein -
  D6I99_RS06825 - 1322674..1324455 (-) 1782 WP_136696356.1 alpha-2,3-sialyltransferase -
  D6I99_RS06830 - 1324434..1325090 (-) 657 WP_025399207.1 acylneuraminate cytidylyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46477.24 Da        Isoelectric Point: 10.0234

>NTDB_id=316669 D6I99_RS06815 WP_136696354.1 1319437..1320618(-) (kpsS) [Campylobacter jejuni strain BC]
MKFRDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWFFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAVLQVYSDTQIKYH
YKKSIEDFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=316669 D6I99_RS06815 WP_136696354.1 1319437..1320618(-) (kpsS) [Campylobacter jejuni strain BC]
ATGAAATTTAGAGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGACCTTATTGTATCACTTTTGAAAAAGATGGAGTCAATGCAAACTCTTCTTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGCTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGTTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTATTTTTTAGCTGTTTTGCAAGTTTATAGCGATACACAGATTAAGTATCAT
TATAAAAAAAGTATAGAAGATTTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.01

99.746

0.878

Multiple sequence alignment