Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D6I99_RS06530 Genome accession   NZ_CP032522
Coordinates   1259637..1260605 (+) Length   322 a.a.
NCBI ID   WP_057096248.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254637..1265605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS06505 cdsA 1255547..1256272 (-) 726 WP_052782285.1 phosphatidate cytidylyltransferase -
  D6I99_RS06510 - 1256281..1256619 (-) 339 WP_136696331.1 hypothetical protein -
  D6I99_RS06515 - 1256621..1257928 (-) 1308 WP_136696332.1 NFACT family protein -
  D6I99_RS06520 mobA 1257990..1258565 (+) 576 WP_136696333.1 molybdenum cofactor guanylyltransferase -
  D6I99_RS06525 pldA 1258562..1259551 (+) 990 WP_136696334.1 phospholipase A -
  D6I99_RS06530 ceuB 1259637..1260605 (+) 969 WP_057096248.1 ABC transporter permease Machinery gene
  D6I99_RS06535 ceuC 1260598..1261536 (+) 939 WP_002881476.1 iron chelate uptake ABC transporter family permease subunit -
  D6I99_RS06540 ceuD 1261533..1262288 (+) 756 WP_052821035.1 ABC transporter ATP-binding protein -
  D6I99_RS06545 ceuB 1262301..1263293 (+) 993 WP_044306199.1 enterochelin ABC transporter substrate-binding protein CeuB -
  D6I99_RS06555 - 1263519..1264073 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35453.40 Da        Isoelectric Point: 9.6678

>NTDB_id=316667 D6I99_RS06530 WP_057096248.1 1259637..1260605(+) (ceuB) [Campylobacter jejuni strain BC]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=316667 D6I99_RS06530 WP_057096248.1 1259637..1260605(+) (ceuB) [Campylobacter jejuni strain BC]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAGTT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGACTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTCATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTATTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991

Multiple sequence alignment