Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D6I99_RS05540 Genome accession   NZ_CP032522
Coordinates   1063030..1063980 (+) Length   316 a.a.
NCBI ID   WP_136696278.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058030..1068980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS05520 - 1058589..1059788 (-) 1200 WP_052817118.1 glycosyltransferase family 8 protein -
  D6I99_RS05525 - 1059781..1060932 (-) 1152 WP_032591573.1 glycosyltransferase family 8 protein -
  D6I99_RS05530 - 1060945..1061805 (-) 861 WP_251823505.1 FkbM family methyltransferase -
  D6I99_RS05535 waaV 1062156..1062971 (-) 816 WP_136696277.1 glycosyltransferase family 2 protein -
  D6I99_RS05540 waaF 1063030..1063980 (+) 951 WP_136696278.1 glycosyltransferase family 9 protein Regulator
  D6I99_RS05545 - 1063966..1064731 (-) 766 Protein_1072 glycosyltransferase family 25 protein -
  D6I99_RS05550 gmhA 1064731..1065291 (-) 561 WP_002881439.1 D-sedoheptulose 7-phosphate isomerase -
  D6I99_RS05555 rfaE1 1065288..1066673 (-) 1386 WP_136696279.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  D6I99_RS05560 rfaD 1066666..1067619 (-) 954 WP_002868597.1 ADP-glyceromanno-heptose 6-epimerase -
  D6I99_RS05565 gmhB 1067620..1068181 (-) 562 Protein_1076 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  D6I99_RS05570 - 1068262..1068564 (+) 303 WP_002852762.1 cytochrome c -
  D6I99_RS05575 ccoS 1068587..1068793 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36366.99 Da        Isoelectric Point: 10.3316

>NTDB_id=316663 D6I99_RS05540 WP_136696278.1 1063030..1063980(+) (waaF) [Campylobacter jejuni strain BC]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFIFYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVVIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=316663 D6I99_RS05540 WP_136696278.1 1063030..1063980(+) (waaF) [Campylobacter jejuni strain BC]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCTTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGCGATCTTTTCATCACAAACGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGTTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.312

99.367

0.927

Multiple sequence alignment