Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D6I99_RS05215 Genome accession   NZ_CP032522
Coordinates   996635..997366 (+) Length   243 a.a.
NCBI ID   WP_136696261.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 991635..1002366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS05185 rpsF 991777..992154 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  D6I99_RS05190 ssb 992163..992714 (+) 552 WP_002853013.1 single-stranded DNA-binding protein -
  D6I99_RS05195 rpsR 992725..992985 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  D6I99_RS05200 lon 993046..995421 (-) 2376 WP_002853487.1 endopeptidase La -
  D6I99_RS05205 - 995438..996085 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  D6I99_RS05210 fliW 996246..996635 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  D6I99_RS05215 proC 996635..997366 (+) 732 WP_136696261.1 pyrroline-5-carboxylate reductase Machinery gene
  D6I99_RS05220 ctsT 997363..997665 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  D6I99_RS05225 - 997662..998324 (+) 663 WP_052817074.1 hypothetical protein -
  D6I99_RS05230 - 998321..998773 (+) 453 WP_002859148.1 hypothetical protein -
  D6I99_RS05235 hemD 998770..999399 (-) 630 WP_057031438.1 uroporphyrinogen-III synthase -
  D6I99_RS05240 thiE 999377..1000009 (-) 633 WP_002864256.1 thiamine phosphate synthase -
  D6I99_RS05245 thiD 999999..1000811 (-) 813 WP_052817203.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  D6I99_RS05250 - 1000808..1001494 (-) 687 WP_002869046.1 3-methyladenine DNA glycosylase -
  D6I99_RS05255 - 1001491..1002252 (-) 762 WP_136696262.1 ATP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26582.04 Da        Isoelectric Point: 8.9106

>NTDB_id=316660 D6I99_RS05215 WP_136696261.1 996635..997366(+) (proC) [Campylobacter jejuni strain BC]
MLYILANGAMATALAYGLKDSYEICIVGRSLEKLQTLAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEMQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=316660 D6I99_RS05215 WP_136696261.1 996635..997366(+) (proC) [Campylobacter jejuni strain BC]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATAGTTATGAAATTTGCATAGT
AGGAAGAAGCTTAGAAAAGCTTCAAACTCTTGCCAAGGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAGG
GCAAAGATGTTATTTTGGCTTTCAAACCTTATGCTTTAGAAAATATTGCCCAAATGCTAAAAGGACAAGCACGCATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCTAATAC
AGCAGCTAAATATAAGGCTTCAACTACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGTTCAGCTTATAAATTAGACAATGAAATGCAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTATCAAAAGAACTTAGTCTTAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCCAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

97.942

100

0.979

Multiple sequence alignment