Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   D6I99_RS03295 Genome accession   NZ_CP032522
Coordinates   624356..624793 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BC     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619356..629793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS03275 kdpD 619844..621775 (+) 1932 WP_087704470.1 sensor histidine kinase KdpD -
  D6I99_RS03280 uvrB 621770..623743 (-) 1974 WP_136696190.1 excinuclease ABC subunit UvrB -
  D6I99_RS03285 - 623897..624127 (+) 231 WP_002852327.1 hypothetical protein -
  D6I99_RS03290 - 624117..624359 (+) 243 WP_002854947.1 hypothetical protein -
  D6I99_RS03295 Cj0683 624356..624793 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D6I99_RS03300 priA 624775..626628 (+) 1854 WP_087695597.1 primosomal protein N' -
  D6I99_RS03305 cipA 626638..628031 (-) 1394 Protein_638 DUF2972 domain-containing protein -
  D6I99_RS03310 ispG 628177..629250 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=316658 D6I99_RS03295 WP_002852324.1 624356..624793(+) (Cj0683) [Campylobacter jejuni strain BC]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=316658 D6I99_RS03295 WP_002852324.1 624356..624793(+) (Cj0683) [Campylobacter jejuni strain BC]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment