Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D2917_RS22115 Genome accession   NZ_CP032519
Coordinates   2047268..2048629 (-) Length   453 a.a.
NCBI ID   WP_151071969.1    Uniprot ID   A0A5P3VNQ5
Organism   Cupriavidus oxalaticus strain T2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2042268..2053629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2917_RS22100 (D2917_21995) - 2043115..2044107 (-) 993 WP_151071967.1 MurR/RpiR family transcriptional regulator -
  D2917_RS22105 (D2917_22000) - 2044412..2046343 (+) 1932 WP_151071968.1 ATP-binding cassette domain-containing protein -
  D2917_RS22110 (D2917_22005) - 2046605..2047090 (-) 486 WP_063237917.1 disulfide bond formation protein B -
  D2917_RS22115 (D2917_22010) radA 2047268..2048629 (-) 1362 WP_151071969.1 DNA repair protein RadA Machinery gene
  D2917_RS22120 (D2917_22015) alr 2048730..2049851 (-) 1122 WP_151071970.1 alanine racemase -
  D2917_RS22125 (D2917_22020) lplT 2050454..2051773 (+) 1320 WP_063237920.1 lysophospholipid transporter LplT -
  D2917_RS22130 (D2917_22025) - 2051808..2052953 (-) 1146 WP_063237921.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48328.65 Da        Isoelectric Point: 7.2390

>NTDB_id=316631 D2917_RS22115 WP_151071969.1 2047268..2048629(-) (radA) [Cupriavidus oxalaticus strain T2]
MAKTKTVYTCTECGGTAPRWAGQCPHCQQWNTLVETVAETAASKRFQPLAASATVRKLSEIEAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPALGLLAEIQLEKIQATLEA
ERPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVPGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=316631 D2917_RS22115 WP_151071969.1 2047268..2048629(-) (radA) [Cupriavidus oxalaticus strain T2]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGCGGCGGCACCGCGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTGGAAACGGTGGCCGAGACGGCCGCGTCCAAGCGCTTCCAGCCGCTGGCGGCATCGGCCA
CGGTGCGCAAGCTGTCGGAGATCGAGGCCGCCGACGTGCCGCGCTTTTCCAGCGGCATCGACGAGTTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCCAACCTGGCCGGGCAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCGGGCGCGCAGATCGCCTTGCGCGCGC
AGCGGCTCGGCGTGGAAAGCCCGGCGCTGGGGTTGCTCGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTCGAGGCC
GAGAGGCCGGAAGTGGCGGTGATCGACTCGATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTCGGTCGC
GCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGCATCGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGTAGCCTGGCCGGCCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGATACGCAT
TCTTCGCACCGGCTGATCCGTGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGACCGAGCG
CGGGCTGCGCGGCATCAGCAACCCGTCGGCACTGTTCCTGTCGCAGCATGAAGAGACCGTGCCCGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACACCGCCCACGTGCCCAACCCGCGCCGG
CTGGCGGTGGGACTGGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATTGCCTGCTTCGA
CCAGGATGTGTTCCTGAACGCGGTGGGCGGGGTCAAGATCACGGAACCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTTGGCGAAGTCGGCCTGGCCGGCGAGATCCGGCCC
AGCCCGCGCGGACAGGAGCGGTTGAAGGAGGCCGCCAAGCTGGGCTTCACGCTGGCTGTGATTCCCAAGGCCAACGCGCC
AAAGCAGAAGATCGACGGCCTTGAAGTGATCGCGGTGGAGCGCATCGAGCAGGCCATCGATCGCGTGCGGCATCTGGATT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3VNQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.106

99.779

0.51
  radA Streptococcus pneumoniae Rx1

46.813

100

0.47
  radA Streptococcus pneumoniae D39

46.813

100

0.47
  radA Streptococcus pneumoniae R6

46.813

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.813

100

0.47
  radA Streptococcus mitis SK321

46.916

100

0.47
  radA Streptococcus mitis NCTC 12261

46.593

100

0.468

Multiple sequence alignment