Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D2917_RS18080 Genome accession   NZ_CP032519
Coordinates   1140845..1143274 (+) Length   809 a.a.
NCBI ID   WP_151071452.1    Uniprot ID   A0A5P3VJQ8
Organism   Cupriavidus oxalaticus strain T2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1135845..1148274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2917_RS18060 (D2917_17975) - 1136663..1137769 (-) 1107 WP_151071450.1 hypothetical protein -
  D2917_RS18065 (D2917_17980) - 1137917..1139167 (+) 1251 WP_063238418.1 lipoprotein-releasing ABC transporter permease subunit -
  D2917_RS18070 (D2917_17985) lolD 1139160..1139900 (+) 741 WP_063238419.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  D2917_RS18075 (D2917_17990) - 1139922..1140773 (+) 852 WP_151071451.1 TatD family hydrolase -
  D2917_RS18080 (D2917_17995) comA 1140845..1143274 (+) 2430 WP_151071452.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D2917_RS18085 (D2917_18000) - 1143280..1144230 (-) 951 WP_063238422.1 MurR/RpiR family transcriptional regulator -
  D2917_RS18090 (D2917_18005) edd 1144485..1146380 (+) 1896 WP_151071453.1 phosphogluconate dehydratase -
  D2917_RS18095 (D2917_18010) - 1146435..1146920 (+) 486 WP_151071454.1 gluconokinase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 85892.06 Da        Isoelectric Point: 10.5882

>NTDB_id=316627 D2917_RS18080 WP_151071452.1 1140845..1143274(+) (comA) [Cupriavidus oxalaticus strain T2]
MRVVVLAFVAGCWVLQQQATLPRQDVVRMAAAGLALAGIAMLVWGRRLHPAWRGLVLAVLAFGAAICWAAWRADMRLRDW
LPVSLESRDLDVRGVVSGLPSASAGGVRFALTVERAVPDGPDKPAPTLPGRLLLHWRDAPPDLYPGQRYTLTIRLRRPRG
LANPFGFDYAYWLLAQGYGATGYVRRAHGPPQDATRERLAWRIEAWRAAVRDHLRAALPADARYGPVLIALVIGDQRGID
TEDWQLFRRTGISHLVSISGLHITMIAGMAGSFAGLLWRHSFGLGRRLRRPLPLWLPARHAALVTAVAGAMTYGLLAGMQ
VPALRTVAMLCVAALAVWSGRAPPASVVLACAALAALLLDPWAVMSPGFWLSFGAVAVIFYAARSGHGAPETRWQRMCAT
LAAAARTQWAVTAGLVPLTLLLFQQVSVVSPLANAIAIPVVSLLVTPLSLAAAAVPATLAAPVLAVAHQAMVWLAALLGW
LSSLPWAMWEAPVSGPLPLLLALLGIALLLAPPAGAAVRLHGGLLVLPLVLARGPPVAHGEFRAVMLDVGQGTAVLVQTR
AHALLYDTGPAYASGGSAGAQVVVPVLRGLGLGRLDQLMVSHEDADHAGGVADVSAAVAVAARSTGAPPDHALLGPPASG
WAPCAAGQQWDWDGVRFTVLHPLPSQSQQAAIASNARSCVLSVATARHRLLLTGDIGVAEERALIDRLPPDALHADVMVV
AHHGSGTSSGVAWLEAVRPGAAVFQLGYANRYRHPRADVWERYGRAGIARYRSDETGAVTMATAPAGYTLSVFRQAEPRY
WRDRPDAPR

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=316627 D2917_RS18080 WP_151071452.1 1140845..1143274(+) (comA) [Cupriavidus oxalaticus strain T2]
GTGCGCGTGGTCGTGTTGGCGTTCGTCGCGGGATGCTGGGTGCTGCAGCAGCAGGCAACGCTGCCGCGGCAGGACGTCGT
GCGCATGGCCGCTGCCGGCCTGGCGCTGGCCGGCATCGCGATGCTGGTGTGGGGCAGGCGCCTGCATCCCGCTTGGCGAG
GTTTGGTGCTGGCCGTCCTGGCCTTTGGCGCCGCGATCTGCTGGGCGGCATGGCGTGCCGACATGCGCTTGCGCGACTGG
CTGCCTGTCTCGCTGGAATCGCGCGATCTCGATGTGCGCGGCGTGGTTTCCGGATTGCCGTCTGCATCGGCGGGCGGCGT
CCGCTTTGCCTTGACCGTAGAGCGTGCCGTGCCGGATGGGCCGGACAAACCAGCGCCGACGTTACCCGGCCGGCTGCTTC
TCCACTGGCGCGACGCGCCGCCTGACCTGTACCCCGGCCAGCGCTACACCCTGACCATACGCCTGCGGCGCCCGCGCGGA
CTGGCCAATCCCTTCGGCTTCGACTATGCCTATTGGCTGCTGGCGCAGGGTTATGGCGCGACGGGTTACGTACGACGCGC
GCATGGTCCGCCCCAGGATGCAACGCGGGAACGGCTCGCATGGCGCATCGAAGCGTGGCGCGCGGCAGTGCGCGATCACC
TGCGCGCGGCGTTGCCGGCTGATGCGCGCTATGGCCCGGTGCTGATTGCGCTGGTGATCGGCGACCAACGCGGCATCGAT
ACGGAAGACTGGCAGTTGTTCCGGCGTACCGGCATCAGCCACCTGGTCAGCATTTCAGGCTTGCATATCACCATGATCGC
TGGCATGGCGGGGTCGTTCGCCGGCCTGCTGTGGCGGCATTCGTTCGGGCTGGGGCGCAGGCTGCGCCGGCCGCTGCCCC
TGTGGCTGCCGGCCAGGCACGCGGCCCTGGTGACGGCGGTAGCCGGTGCGATGACATACGGACTGCTGGCCGGGATGCAG
GTGCCCGCGTTGCGCACGGTGGCGATGCTATGCGTGGCCGCGCTGGCGGTATGGAGTGGGCGCGCACCGCCGGCGTCGGT
GGTGCTGGCCTGCGCGGCACTGGCGGCATTGCTGCTGGATCCGTGGGCGGTGATGTCGCCGGGCTTCTGGCTGTCTTTTG
GCGCGGTGGCGGTGATTTTCTACGCTGCCCGGTCCGGGCATGGCGCGCCGGAAACTCGCTGGCAACGCATGTGTGCCACG
CTTGCCGCCGCGGCGCGCACGCAATGGGCGGTGACAGCCGGGCTGGTGCCGCTGACGCTGTTGCTGTTCCAGCAGGTGTC
GGTGGTGTCGCCGCTCGCCAATGCGATCGCGATCCCGGTGGTCAGCCTGCTGGTGACGCCGCTGTCGCTGGCCGCCGCTG
CCGTGCCGGCCACGCTGGCCGCGCCGGTGCTGGCCGTCGCGCATCAGGCCATGGTGTGGCTGGCCGCTTTGCTGGGCTGG
CTTTCCAGTCTGCCGTGGGCCATGTGGGAGGCGCCGGTATCGGGGCCGTTGCCGTTGCTGCTCGCCTTGCTCGGGATCGC
GCTGTTGCTGGCGCCGCCCGCCGGTGCCGCGGTGCGCCTGCATGGCGGCCTGCTGGTGTTGCCGCTCGTATTGGCGCGCG
GCCCGCCGGTGGCGCATGGCGAGTTCCGTGCGGTGATGCTCGACGTGGGGCAGGGGACCGCTGTGCTGGTGCAGACGCGT
GCGCATGCGTTGCTGTACGACACGGGCCCTGCCTATGCATCGGGCGGCAGCGCGGGTGCGCAAGTGGTGGTGCCGGTGCT
GCGCGGCCTGGGCCTCGGCCGGCTCGACCAGCTGATGGTGAGCCATGAAGACGCGGACCATGCCGGTGGCGTGGCGGACG
TGTCGGCGGCGGTGGCCGTGGCGGCGCGCAGTACCGGCGCGCCGCCGGACCATGCCTTGCTTGGGCCGCCAGCATCCGGC
TGGGCGCCCTGCGCGGCCGGGCAGCAATGGGACTGGGACGGCGTGCGTTTCACGGTGCTGCATCCGCTGCCATCGCAGTC
GCAACAGGCGGCGATCGCCAGCAACGCCCGTAGCTGCGTGCTGAGCGTGGCGACCGCGCGGCATCGCCTGTTGCTGACCG
GCGATATCGGCGTGGCCGAAGAGCGCGCGCTGATCGACCGGCTGCCGCCCGATGCGCTGCATGCCGACGTGATGGTGGTG
GCGCACCATGGCAGCGGCACGTCTTCCGGTGTCGCGTGGCTGGAAGCGGTGCGGCCCGGGGCCGCGGTATTCCAGCTGGG
CTATGCCAACCGCTACCGCCATCCGCGCGCCGACGTGTGGGAGCGTTATGGGCGCGCCGGCATTGCCCGCTACCGCAGCG
ACGAAACCGGCGCGGTGACCATGGCCACCGCGCCGGCGGGTTATACGCTGTCGGTGTTCCGGCAGGCTGAGCCGCGCTAC
TGGCGCGACCGGCCGGATGCGCCGCGCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(548-743)

Competence protein (Competence)

(231-511)

Domain of unknown function (DUF4131) (DUF4131)

(28-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3VJQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.982

100

0.491

Multiple sequence alignment