Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E5Q08_RS05540 Genome accession   NZ_CP038987
Coordinates   1098463..1099542 (-) Length   359 a.a.
NCBI ID   WP_010887732.1    Uniprot ID   Q9RVE0
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093463..1104542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q08_RS05520 - 1094565..1095320 (-) 756 WP_010887728.1 class I SAM-dependent methyltransferase -
  E5Q08_RS05525 alr 1095367..1096422 (+) 1056 WP_027479629.1 alanine racemase -
  E5Q08_RS05530 fni 1096587..1097471 (-) 885 WP_227086026.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  E5Q08_RS05535 - 1097600..1098466 (-) 867 WP_010887731.1 DciA family protein -
  E5Q08_RS05540 recF 1098463..1099542 (-) 1080 WP_010887732.1 DNA replication/repair protein RecF Machinery gene
  E5Q08_RS05545 - 1099708..1100778 (+) 1071 WP_010887733.1 GGDEF domain-containing protein -
  E5Q08_RS05550 - 1101015..1101500 (-) 486 WP_010887734.1 hypothetical protein -
  E5Q08_RS05555 - 1101575..1102069 (+) 495 WP_034349604.1 hypothetical protein -
  E5Q08_RS05560 trpS 1102657..1103682 (+) 1026 WP_010887736.1 tryptophan--tRNA ligase -
  E5Q08_RS05565 - 1103843..1104124 (-) 282 WP_034349694.1 YiaA/YiaB family inner membrane protein -
  E5Q08_RS05570 - 1104227..1104457 (-) 231 WP_010887738.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39141.03 Da        Isoelectric Point: 5.0870

>NTDB_id=316604 E5Q08_RS05540 WP_010887732.1 1098463..1099542(-) (recF) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
MGDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRADLQQGG
SLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQR
NAALRGGEEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRGRRAEELA
RGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV
PQAIVTGTELAPGAALTLRAQAGRFTPVADEEMQAEGTA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=316604 E5Q08_RS05540 WP_010887732.1 1098463..1099542(-) (recF) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
ATGGGGGATGTGCGTCTCTCGGCCCTGTCTACCCTGAATTACCGGAATCTTGCGCCTGGGACGCTGAATTTCCCGGAAGG
CGTGACCGGGATTTATGGGGAGAACGGAGCTGGCAAGACCAACCTGCTCGAGGCCGCCTACCTCGCGCTGACCGGACAGA
CCGACGCGCCGCGTATCGAGCAACTGATTCAAGCGGGCGAGACCGAGGCGTATGTGCGGGCCGATTTGCAGCAGGGCGGC
AGCCTCAGCATTCAGGAAGTGGGGCTGGGGCGCGGGCGGCGGCAACTGAAGGTGGACGGCGTGCGCGCCCGGACCGGCGA
CCTGCCGCGCGGCGGAGCGGTGTGGATTCGCCCGGAAGACAGCGAACTGGTGTTCGGGCCGCCCTCGGGACGCCGGGCGT
ATCTGGACTCGCTGCTCTCGCGCCTCAGCGCCCGCTACGGCGAACAACTCTCGCGCTACGAGCGTACGGTGTCGCAGCGC
AACGCGGCCCTGCGCGGCGGCGAGGAATGGGCGATGCACGTCTGGGACGACGTCCTGCTCAAGCTCGGCACCGAAATCAT
GCTGTTTCGTCGCCGGGCGCTCACGCGGCTCGACGAACTGGCGCGCGAGGCGAACGCCCAGCTCGGCAGCCGCAAGACGC
TCGCGCTTACGCTGACCGAGAGCACCTCGCCCGAAACCTACGCCGCCGACCTGCGGGGCCGCCGCGCCGAGGAATTGGCA
CGCGGCTCCACCGTCACCGGCCCGCACCGCGACGACCTGCTGCTCACCCTGGGCGACTTTCCAGCGAGCGACTATGCCAG
CCGGGGCGAAGGCCGCACTGTCGCGCTCGCGCTGCGCCGCGCCGAACTCGAACTGCTGCGCGAGAAATTCGGCGAAGACC
CCGTTTTGCTCCTCGACGACTTCACCGCCGAACTCGACCCCCACCGCCGCCAGTACCTGCTCGACCTCGCCGCCAGCGTG
CCGCAGGCCATCGTGACCGGCACCGAACTCGCTCCCGGCGCGGCGCTGACGTTGCGGGCGCAGGCGGGGCGCTTTACTCC
AGTGGCAGATGAGGAGATGCAAGCGGAGGGCACGGCGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(7-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2O5V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1