Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Eco118UI_RS05630 Genome accession   NZ_CP032515
Coordinates   1166407..1167036 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 118UI     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161407..1172036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Eco118UI_RS05610 (Eco118UI_05675) ycbZ 1161809..1163569 (-) 1761 WP_000156482.1 Lon protease family protein -
  Eco118UI_RS05615 (Eco118UI_05680) matP 1163755..1164207 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  Eco118UI_RS05620 (Eco118UI_05685) ompA 1164283..1165323 (-) 1041 WP_001309394.1 porin OmpA -
  Eco118UI_RS05625 (Eco118UI_05695) sulA 1165679..1166188 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  Eco118UI_RS05630 (Eco118UI_05700) sxy/tfoX 1166407..1167036 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  Eco118UI_RS05635 (Eco118UI_05705) yccS 1166999..1169161 (-) 2163 WP_000875041.1 YccS family putative transporter -
  Eco118UI_RS05640 (Eco118UI_05710) yccF 1169171..1169617 (-) 447 WP_001261235.1 YccF domain-containing protein -
  Eco118UI_RS05645 (Eco118UI_05715) helD 1169740..1171794 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=316600 Eco118UI_RS05630 WP_000839153.1 1166407..1167036(+) (sxy/tfoX) [Escherichia coli strain 118UI]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=316600 Eco118UI_RS05630 WP_000839153.1 1166407..1167036(+) (sxy/tfoX) [Escherichia coli strain 118UI]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment