Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D6T62_RS11970 Genome accession   NZ_CP032513
Coordinates   2190618..2191247 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain SFL1520     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2185618..2196247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6T62_RS11955 (D6T62_12135) helD 2185860..2187914 (-) 2055 WP_005069564.1 DNA helicase IV -
  D6T62_RS11960 (D6T62_12140) - 2188037..2188483 (+) 447 WP_001261235.1 YccF domain-containing protein -
  D6T62_RS11965 (D6T62_12145) yccS 2188493..2190655 (+) 2163 WP_000875052.1 YccS family putative transporter -
  D6T62_RS11970 (D6T62_12150) sxy/tfoX 2190618..2191247 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D6T62_RS11975 (D6T62_12155) sulA 2191466..2191975 (+) 510 WP_000288715.1 SOS-induced cell division inhibitor SulA -
  D6T62_RS11980 (D6T62_12165) ompA 2192331..2193377 (+) 1047 WP_005047463.1 porin OmpA -
  D6T62_RS11985 (D6T62_12170) matP 2193453..2193905 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D6T62_RS11990 (D6T62_12175) - 2194090..2195850 (+) 1761 WP_000156487.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=316581 D6T62_RS11970 WP_000839153.1 2190618..2191247(-) (sxy/tfoX) [Shigella flexneri strain SFL1520]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=316581 D6T62_RS11970 WP_000839153.1 2190618..2191247(-) (sxy/tfoX) [Shigella flexneri strain SFL1520]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAGCTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment