Detailed information NTG0031657

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VSAL_RS13460
• Genome accession: NC_011312
• Coordinates: 2770458..2773841 (+)
• Length: 1127 a.a.
• NCBI ID: WP_012551045.1
• Uniprot ID: B6EL07
• Organism: Aliivibrio salmonicida LFI1238
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2765458..2778841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSAL_RS13440 (VSAL_I2571)	erpA	2765930..2766271 (-)	342	WP_012551041.1	iron-sulfur cluster insertion protein ErpA	-
VSAL_RS13445 (VSAL_I2572)	hemL	2766507..2767802 (+)	1296	WP_012551042.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VSAL_RS13450 (VSAL_I2573)	-	2768062..2769147 (+)	1086	WP_012551043.1	AI-2E family transporter	-
VSAL_RS13455 (VSAL_I2574)	rsmC	2769274..2770293 (+)	1020	WP_044583325.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VSAL_RS13460 (VSAL_I2575)	chiS	2770458..2773841 (+)	3384	WP_012551045.1	response regulator	Regulator
VSAL_RS13470 (VSAL_I2576)	-	2774455..2776100 (+)	1646	Protein_2621	ABC transporter substrate-binding protein	-
VSAL_RS13475 (VSAL_I2577)	-	2776248..2777234 (+)	987	WP_012551046.1	ABC transporter permease	-
VSAL_RS13480 (VSAL_I2578)	-	2777237..2778262 (+)	1026	WP_012551047.1	ABC transporter permease	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 126471.60 Da
• Isoelectric Point: 6.2987

>NTDB_id=31657 VSAL_RS13460 WP_012551045.1 2770458..2773841(+) (chiS) [Aliivibrio salmonicida LFI1238]
MDKKQHFKRLQNTLMIAFLVLSITPLSVIAIFFLHSHSQDLATQSTAHLVSLRDNKEQQVSNYVKARKSEVLGFARSELA
NASGGRFYGLISAFPRLGNTIEDARSNAQIRYIGGSGNKIRTSILPESDSYIGSERYSLLHKRYHWAYLELLKRSDFTDI
LLVDIDGNVVYSQKKEDNYGTNLITGKYHDTPLGKTYSKIRSMMEKPENKDDIPVVFSDFSIMNGENVSWFAAPIVQQGY
LHSFVLFKLPNNGLSLLLKNGQQDSSSIKSYLVGDNSLSLISGISTDKNTSENIIQALSGKTDVGSFTDKSNNSVLSAFT
VVHIDDKVWGLSVELPEKEAFSRIKQLEQIFVIAMILAIVCVVIASHFLSNSITAPLLRLTWVAERLSAGDLDQKMISTD
RKDEIGRLAVSFARMQRSIREKIQLIKAQNEELETNLSIIQHKNQELEAADKLKDEFLATTSHELRTPLHGMVGIAEALY
TGANGPISASHRHQLEIIINSGQRLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVDK
SLPSVYADEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQFLRVQVVDTGHGIPADELEHIFEPLIQAGHDSNRYRQGS
GLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPLASKDQIQQHKSLTKEDIAHYQTPEKLEYNLDDLDETQPENPNGP
LLLVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEETPELVLLDVMMPGMSGYEVCQEVRKQYSHSQLPIIMLT
ALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHLQASQAEIRLTENDRLQQEIRHREKVEASLLETQTHILGQLNHA
QEAIICAKSDGKIQYVNHAAAKLFLRTEEQLSRYSIDELIAKRSLIEGDKHHRGNIDVYIDGSIEQINADLVHLPPASGL
SLMLIVSHKNEASEQRIYDLESAVEALSAFAFEGDKQKLNSLSSIGGDIAQLAIKANENKEDKGTIMRELIVDGMISALS
YWEESTGHSKFTLAEESGLWRVYLDRSTLQTRTLDKYLRVESLPKTPRWRTVVSTLEYILEHCNEHNQDREKLIRIKDKL
QILISSN

Nucleotide

• Length: 3384 bp

>NTDB_id=31657 VSAL_RS13460 WP_012551045.1 2770458..2773841(+) (chiS) [Aliivibrio salmonicida LFI1238]
ATGGATAAAAAACAACACTTTAAACGTCTTCAAAATACGTTAATGATTGCATTTCTTGTTTTAAGTATTACTCCTCTTTC
TGTTATTGCTATATTTTTTCTACACTCACATAGCCAAGATCTCGCAACTCAAAGTACGGCGCATCTTGTTTCATTAAGAG
ACAATAAAGAGCAGCAAGTAAGTAACTACGTCAAAGCTCGTAAATCAGAAGTGCTTGGCTTTGCTCGTTCCGAGTTAGCT
AATGCTAGTGGTGGGCGTTTCTATGGTTTAATTAGTGCCTTTCCTCGTCTTGGTAATACGATTGAAGATGCGAGGAGCAA
TGCTCAAATTCGATACATTGGCGGCTCTGGTAATAAAATACGAACCAGTATTCTTCCTGAATCCGATTCTTATATTGGCA
GTGAACGCTATAGTCTACTTCATAAACGATACCACTGGGCATACCTTGAATTATTAAAGCGATCTGATTTCACTGACATT
CTTTTAGTCGATATCGATGGTAATGTCGTTTATTCCCAGAAAAAAGAAGATAACTACGGTACTAATTTAATTACGGGAAA
ATACCACGACACACCACTTGGAAAAACCTACAGTAAAATTCGGTCTATGATGGAAAAACCAGAAAATAAAGACGATATTC
CTGTCGTATTTTCTGACTTTTCTATTATGAATGGAGAAAATGTCTCTTGGTTTGCGGCACCAATTGTACAGCAAGGTTAT
TTGCACAGCTTCGTCTTGTTTAAACTGCCAAACAACGGTCTAAGCCTACTATTAAAAAATGGACAACAAGATTCATCATC
GATAAAAAGCTATCTTGTTGGTGATAATTCTCTTTCTTTAATTAGTGGTATCAGTACCGATAAAAATACGTCTGAAAATA
TTATTCAAGCATTAAGCGGGAAAACTGACGTAGGTAGCTTTACTGATAAAAGTAATAATAGTGTACTTTCTGCTTTTACC
GTGGTTCACATTGATGACAAAGTATGGGGACTCTCTGTTGAATTACCAGAAAAAGAAGCCTTCTCTCGTATCAAACAATT
AGAACAAATTTTTGTTATCGCGATGATCTTAGCCATTGTGTGTGTTGTTATTGCTTCCCATTTCTTATCAAATTCAATTA
CTGCACCTTTATTGAGGTTAACGTGGGTAGCAGAGAGACTCTCGGCAGGCGATCTCGATCAAAAAATGATCAGCACCGAT
CGAAAAGATGAAATAGGACGATTAGCAGTCAGCTTTGCACGTATGCAGCGATCTATTCGTGAAAAAATTCAATTAATCAA
AGCTCAAAATGAAGAATTAGAAACAAACCTTTCTATTATTCAACATAAAAACCAAGAATTAGAAGCGGCTGATAAACTCA
AAGATGAATTCCTAGCCACCACATCTCATGAATTAAGAACACCATTACACGGTATGGTCGGTATTGCTGAAGCCCTTTAT
ACCGGGGCTAATGGTCCAATCTCCGCTTCTCATCGTCATCAATTAGAAATTATAATTAATAGTGGCCAGCGCCTAACCAA
CTTAGTGAATGATCTTTTGGATTACCACAAAATGCGTCACGGCAATCTGGATATAAATCGCCACGTTGCCGACTTATCAT
CGGCAACAAGTTTGGTTTTAGAGTTATCGCATCATTTGCTGGGCAACAAACCAATAAGAATAATCAATCAAGTAGATAAG
TCTTTACCTTCTGTCTATGCTGATGAACAACGATTAGAACAAGTACTTTATAATTTAATCGGTAATGCGATTAAATATAC
TTCAGAAGGAAAAATTGTTATTTCAGCAAGTGTTGTCGATCAATTCTTACGAGTTCAAGTTGTCGATACTGGTCATGGTA
TTCCTGCTGATGAATTAGAGCATATTTTTGAACCCTTAATTCAAGCAGGGCATGATTCTAATCGCTATCGCCAAGGATCA
GGGCTTGGTTTGTCAATCAGTCGTCAATTAATAGAATTAATGGGTGGATCGCTGTACGTAAGCAGCCAACCAATGGTTGG
CGCGACCTTTAGCTTTACTTTACCTTTAGCATCTAAAGATCAAATTCAACAACATAAATCCCTAACAAAAGAAGATATTG
CTCATTATCAAACACCAGAAAAACTAGAATATAACTTAGACGATTTAGATGAAACTCAACCAGAAAATCCGAATGGTCCT
TTACTTCTTGTTGCTGATGATGAGCCCGTTAATTTACAAGTGTTAAGTAGTTTCTTAAAACTGGAAGGCTATCGCGTAAA
AACGGCCAATGATGGCCCTGAGACATTAAAACAGTTAGAAGAAGAAACCCCTGAATTAGTGCTACTAGATGTCATGATGC
CAGGAATGAGTGGATATGAGGTATGCCAAGAGGTCAGAAAGCAATATAGCCACTCTCAATTGCCTATTATCATGCTCACG
GCTTTAAACCAAACTCAAGATAGAGTGAGAGGTTTTGAATCAGGTGCTAATGACTATTTGAGTAAACCATTTAATAAACA
AGAGCTGGCGGCAAGGATAAAAGCACATTTACAAGCAAGCCAAGCAGAAATAAGGCTAACAGAGAATGATCGCTTACAAC
AAGAGATCCGACATAGAGAAAAAGTAGAAGCCAGTTTATTAGAAACACAAACTCATATCTTAGGGCAACTAAACCATGCC
CAAGAAGCCATTATTTGTGCTAAATCTGACGGTAAAATTCAATATGTTAACCATGCAGCAGCAAAACTTTTTTTACGTAC
AGAAGAGCAATTGTCACGATATTCAATTGATGAGTTAATTGCTAAACGCAGCTTAATTGAGGGTGATAAACATCATAGAG
GTAATATCGATGTCTATATTGATGGTTCTATTGAACAAATTAATGCTGACTTAGTACACCTACCTCCCGCATCAGGCTTA
TCTCTAATGCTTATTGTTAGTCATAAAAATGAAGCCAGTGAGCAGCGTATATATGATTTAGAAAGCGCGGTAGAAGCATT
GTCTGCGTTTGCTTTCGAAGGAGATAAGCAAAAGCTTAACTCTTTGTCTTCTATTGGTGGTGACATTGCACAATTGGCAA
TTAAAGCGAATGAAAATAAAGAAGATAAGGGAACAATTATGCGAGAACTCATTGTTGATGGCATGATATCTGCCCTATCT
TATTGGGAAGAATCTACTGGGCATTCAAAGTTTACACTCGCAGAAGAAAGTGGATTATGGCGCGTATATCTTGATAGAAG
CACATTGCAAACTCGTACGCTAGATAAGTATTTACGAGTTGAGTCTCTCCCTAAAACACCACGTTGGCGAACGGTAGTCA
GTACATTGGAATATATTCTAGAACATTGTAACGAACATAACCAAGACAGAGAGAAGCTCATAAGAATAAAAGATAAGCTT
CAAATTCTTATTTCATCAAATTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (568-677)

• HAMP domain (HAMP) (368-421)

• Response regulator receiver domain (Response_reg) (723-834)

• His Kinase A (phospho-acceptor) domain (HisKA) (454-521)

3D structure

• AlphaFold DB: B6EL07

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	63.475	100	0.635