Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | D5H27_RS17685 | Genome accession | NZ_CP032506 |
| Coordinates | 3542324..3542614 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JT3-1 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3537324..3547614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5H27_RS17645 (D5H27_17420) | darA | 3537340..3537669 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| D5H27_RS17650 (D5H27_17425) | - | 3537682..3538122 (+) | 441 | WP_004264730.1 | DUF327 family protein | - |
| D5H27_RS17655 (D5H27_17430) | holB | 3538134..3539123 (+) | 990 | WP_032872173.1 | DNA polymerase III subunit delta' | - |
| D5H27_RS17660 (D5H27_17435) | ricT | 3539126..3539953 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| D5H27_RS17665 (D5H27_17440) | yabA | 3539968..3540327 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| D5H27_RS17670 (D5H27_17445) | - | 3540388..3541131 (+) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| D5H27_RS17675 (D5H27_17450) | - | 3541118..3541418 (+) | 301 | Protein_3422 | GIY-YIG nuclease family protein | - |
| D5H27_RS17680 (D5H27_17455) | rsmI | 3541393..3542274 (+) | 882 | WP_032872176.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| D5H27_RS17685 (D5H27_17460) | abrB | 3542324..3542614 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| D5H27_RS17690 (D5H27_17465) | metG | 3543098..3545089 (+) | 1992 | WP_022552471.1 | methionine--tRNA ligase | - |
| D5H27_RS17695 (D5H27_17470) | - | 3545166..3545933 (+) | 768 | WP_032872179.1 | TatD family hydrolase | - |
| D5H27_RS17700 (D5H27_17475) | - | 3546068..3547393 (+) | 1326 | WP_087920785.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=316559 D5H27_RS17685 WP_169510469.1 3542324..3542614(-) (abrB) [Bacillus velezensis strain JT3-1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=316559 D5H27_RS17685 WP_169510469.1 3542324..3542614(-) (abrB) [Bacillus velezensis strain JT3-1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |