Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   D5H27_RS12625 Genome accession   NZ_CP032506
Coordinates   2565356..2565496 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain JT3-1     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2560356..2570496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5H27_RS12600 (D5H27_12460) - 2560702..2561085 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  D5H27_RS12605 (D5H27_12465) comA 2561107..2561751 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  D5H27_RS12610 (D5H27_12470) comP 2561832..2564132 (-) 2301 WP_032876801.1 histidine kinase Regulator
  D5H27_RS12615 (D5H27_12475) comX 2564146..2564319 (-) 174 WP_012118314.1 competence pheromone ComX -
  D5H27_RS12620 (D5H27_12480) - 2564288..2565148 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  D5H27_RS12625 (D5H27_12485) degQ 2565356..2565496 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  D5H27_RS12635 (D5H27_12495) - 2565962..2566303 (+) 342 WP_032876795.1 hypothetical protein -
  D5H27_RS12640 (D5H27_12500) - 2566310..2567533 (-) 1224 WP_032876792.1 EAL and HDOD domain-containing protein -
  D5H27_RS12645 (D5H27_12505) - 2567663..2569129 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  D5H27_RS12650 (D5H27_12510) - 2569147..2569698 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  D5H27_RS12655 (D5H27_12515) - 2569795..2570193 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=316543 D5H27_RS12625 WP_003152043.1 2565356..2565496(-) (degQ) [Bacillus velezensis strain JT3-1]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=316543 D5H27_RS12625 WP_003152043.1 2565356..2565496(-) (degQ) [Bacillus velezensis strain JT3-1]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891

Multiple sequence alignment