Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO103_RS25950 Genome accession   NC_013353
Coordinates   5076052..5076528 (-) Length   158 a.a.
NCBI ID   WP_001186196.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 str. 12009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5071052..5081528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO103_RS33050 - 5072779..5072893 (-) 115 Protein_4964 integrase -
  ECO103_RS25920 (ECO103_4886) - 5073268..5074110 (-) 843 WP_001280439.1 DUF4942 domain-containing protein -
  ECO103_RS25925 (ECO103_4887) - 5074195..5074392 (-) 198 WP_000839251.1 DUF957 domain-containing protein -
  ECO103_RS25930 (ECO103_4888) - 5074404..5074892 (-) 489 WP_001054226.1 DUF5983 family protein -
  ECO103_RS25935 (ECO103_4889) - 5074889..5075266 (-) 378 WP_000854698.1 TA system toxin CbtA family protein -
  ECO103_RS25940 (ECO103_4890) - 5075313..5075687 (-) 375 WP_000017094.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECO103_RS25945 (ECO103_4891) - 5075762..5075983 (-) 222 WP_001220316.1 DUF987 domain-containing protein -
  ECO103_RS25950 (ECO103_4892) radC 5076052..5076528 (-) 477 WP_001186196.1 JAB domain-containing protein Machinery gene
  ECO103_RS25955 (ECO103_4893) - 5076543..5077028 (-) 486 WP_000213700.1 antirestriction protein -
  ECO103_RS25960 (ECO103_4894) - 5077119..5077937 (-) 819 WP_001234727.1 DUF932 domain-containing protein -
  ECO103_RS25965 - 5078055..5078250 (-) 196 Protein_4974 DUF905 family protein -
  ECO103_RS25970 (ECO103_4895) - 5078321..5081167 (-) 2847 WP_000820552.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17760.40 Da        Isoelectric Point: 7.6152

>NTDB_id=31653 ECO103_RS25950 WP_001186196.1 5076052..5076528(-) (radC) [Escherichia coli O103:H2 str. 12009]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVSFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGRQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31653 ECO103_RS25950 WP_001186196.1 5076052..5076528(-) (radC) [Escherichia coli O103:H2 str. 12009]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGAGCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGACAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment